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chinhnguyenh merged 2 commits into from
Oct 7, 2025
Merged

feat: add ClickHouse support and related migrations #38

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b5149ae
feat: add ClickHouse support and related migrations
chinhnguyenh Oct 7, 2025
e468fcc
feat: add ClickHouse to supported databases in README
chinhnguyenh Oct 7, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/ci.yaml
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Expand Up @@ -42,7 +42,7 @@ jobs:
integration-tests:
strategy:
matrix:
dialect: [mysql, postgresql, sqlite, mssql]
dialect: [mysql, postgresql, sqlite, mssql, clickhouse]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
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1 change: 1 addition & 0 deletions README.md
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Expand Up @@ -131,6 +131,7 @@ The provider supports the following databases:
* PostgreSQL
* SQLite
* Microsoft SQL Server
* ClickHouse

### FAQ

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1 change: 1 addition & 0 deletions atlas_provider_sqlalchemy/main.py
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Expand Up @@ -23,6 +23,7 @@ class Dialect(str, Enum):
postgresql = "postgresql"
sqlite = "sqlite"
mssql = "mssql"
clickhouse = "clickhouse"


def run(
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645 changes: 643 additions & 2 deletions poetry.lock
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1 change: 1 addition & 0 deletions pyproject.toml
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Expand Up @@ -10,6 +10,7 @@ packages = [{include = "atlas_provider_sqlalchemy"}]
python = "^3.9"
typer = ">0.9.0,<=1.0.0"
sqlalchemy = "^2.0.41"
clickhouse-sqlalchemy = "^0.3.2"

[tool.pyrefly]
project-includes = [
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3 changes: 2 additions & 1 deletion tests/atlas-script.hcl
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Expand Up @@ -8,6 +8,7 @@ locals {
postgresql = "docker://postgres/15"
sqlite = "sqlite://?mode=memory&_fk=1"
mssql = "docker://sqlserver/2022-latest"
clickhouse = "docker://clickhouse/25.9/dev"
}[var.dialect]
}

Expand All @@ -17,7 +18,7 @@ data "external_schema" "sqlalchemy" {
"run",
"python3",
"load_models.py",
var.dialect, // mysql | postgresql | sqlite | mssql
var.dialect, // mysql | postgresql | sqlite | mssql | clickhouse
]
}

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3 changes: 2 additions & 1 deletion tests/atlas-standalone.hcl
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Expand Up @@ -13,6 +13,7 @@ locals {
postgresql = "docker://postgres/15"
sqlite = "sqlite://?mode=memory&_fk=1"
mssql = "docker://sqlserver/2022-latest"
clickhouse = "docker://clickhouse/23.11/dev"
}[var.dialect]
}

Expand All @@ -23,7 +24,7 @@ data "external_schema" "sqlalchemy" {
"python3",
"../atlas_provider_sqlalchemy/main.py",
"--path", var.path,
"--dialect", var.dialect, // mysql | postgresql | sqlite | mssql
"--dialect", var.dialect, // mysql | postgresql | sqlite | mssql | clickhouse
]
}

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14 changes: 14 additions & 0 deletions tests/migrations/clickhouse/20251007100727.sql
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@@ -0,0 +1,14 @@
-- Create "address" table
CREATE TABLE `address` (
`id` Int32,
`email_address` FixedString(30),
`user_id` Int32
) ENGINE = MergeTree
PRIMARY KEY (`id`) ORDER BY (`id`) SETTINGS index_granularity = 8192;
-- Create "user_account" table
CREATE TABLE `user_account` (
`id` Int32,
`name` FixedString(30),
`fullname` FixedString(30)
) ENGINE = MergeTree
PRIMARY KEY (`id`) ORDER BY (`id`) SETTINGS index_granularity = 8192;
2 changes: 2 additions & 0 deletions tests/migrations/clickhouse/atlas.sum
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@@ -0,0 +1,2 @@
h1:erjqmA/a6B0TjDxdO09+CH0ToQUBXoN9Nhos0cswMpc=
20251007100727.sql h1:sOg0sT6jinsVMTDsIeArCpUIcljWYu4lmBqLPuBKGQo=
6 changes: 5 additions & 1 deletion tests/test_main.py
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Expand Up @@ -23,6 +23,7 @@
[
(Dialect.postgresql, "tests/testdata/models/ddl_postgres.sql"),
(Dialect.mysql, "tests/testdata/models/ddl_mysql.sql"),
(Dialect.clickhouse, "tests/testdata/models/ddl_clickhouse.sql"),
],
)
def test_run_models(
Expand All @@ -44,6 +45,7 @@ def test_run_models(
[
(Dialect.postgresql, "tests/testdata/old_models/ddl_postgres.sql"),
(Dialect.mysql, "tests/testdata/old_models/ddl_mysql.sql"),
(Dialect.clickhouse, "tests/testdata/old_models/ddl_clickhouse.sql"),
],
)
def test_run_old_models(
Expand All @@ -65,6 +67,7 @@ def test_run_old_models(
[
(Dialect.postgresql, "tests/testdata/structured_models/ddl_postgres.sql"),
(Dialect.mysql, "tests/testdata/structured_models/ddl_mysql.sql"),
(Dialect.clickhouse, "tests/testdata/structured_models/ddl_clickhouse.sql"),
],
)
def test_run_structured_models(
Expand All @@ -83,7 +86,7 @@ def test_run_structured_models(

@pytest.mark.parametrize(
"dialect",
[Dialect.postgresql, Dialect.mysql],
[Dialect.postgresql, Dialect.mysql, Dialect.clickhouse],
)
def test_run_multiple_paths(
dialect: Dialect,
Expand All @@ -109,6 +112,7 @@ def test_run_multiple_paths(
[
(Dialect.postgresql, "tests/testdata/tables/ddl_postgres.sql"),
(Dialect.mysql, "tests/testdata/tables/ddl_mysql.sql"),
(Dialect.clickhouse, "tests/testdata/tables/ddl_clickhouse.sql"),
],
)
def test_run_models_2(
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7 changes: 7 additions & 0 deletions tests/testdata/models/ddl_clickhouse.sql
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@@ -0,0 +1,7 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/models/models.py:11
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/models/models.py:26

CREATE TABLE user_account (id INTEGER, name FixedString(30), fullname FixedString(30)) ENGINE = MergeTree() ORDER BY id;

CREATE TABLE address (id INTEGER, email_address FixedString(30), user_id INTEGER) ENGINE = MergeTree() ORDER BY id;

4 changes: 2 additions & 2 deletions tests/testdata/models/ddl_mysql.sql
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@@ -1,5 +1,5 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/models/models.py:10
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/models/models.py:23
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/models/models.py:11
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/models/models.py:26

CREATE TABLE user_account (id INTEGER NOT NULL AUTO_INCREMENT, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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4 changes: 2 additions & 2 deletions tests/testdata/models/ddl_postgres.sql
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@@ -1,5 +1,5 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/models/models.py:10
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/models/models.py:23
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/models/models.py:11
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/models/models.py:26

CREATE TABLE user_account (id SERIAL NOT NULL, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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5 changes: 5 additions & 0 deletions tests/testdata/models/models.py
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@@ -1,6 +1,7 @@
from typing import List, Optional
from sqlalchemy import ForeignKey, String
from sqlalchemy.orm import Mapped, mapped_column, relationship, DeclarativeBase
from clickhouse_sqlalchemy import engines


class Base(DeclarativeBase):
Expand All @@ -9,6 +10,8 @@ class Base(DeclarativeBase):

class User(Base):
__tablename__ = "user_account"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
name: Mapped[str] = mapped_column(String(30))
fullname: Mapped[Optional[str]] = mapped_column(String(30))
Expand All @@ -22,6 +25,8 @@ def __repr__(self) -> str:

class Address(Base):
__tablename__ = "address"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
email_address: Mapped[str] = mapped_column(String(30))
user_id: Mapped[int] = mapped_column(ForeignKey("user_account.id"))
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13 changes: 13 additions & 0 deletions tests/testdata/multi_path/ddl_clickhouse.sql
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@@ -0,0 +1,13 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:10
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:21
-- atlas:pos user_account2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:10
-- atlas:pos address2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:22

CREATE TABLE user_account (id INTEGER, name FixedString(30), fullname FixedString(30)) ENGINE = MergeTree() ORDER BY id;

CREATE TABLE address (id INTEGER, email_address FixedString(30), user_id INTEGER) ENGINE = MergeTree() ORDER BY id;

CREATE TABLE user_account2 (id INTEGER, name FixedString(30), fullname FixedString(30)) ENGINE = MergeTree() ORDER BY id;

CREATE TABLE address2 (id INTEGER, email_address FixedString(30), user_id INTEGER) ENGINE = MergeTree() ORDER BY id;

8 changes: 4 additions & 4 deletions tests/testdata/multi_path/ddl_mysql.sql
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@@ -1,7 +1,7 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:9
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:18
-- atlas:pos user_account2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:9
-- atlas:pos address2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:19
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:10
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:21
-- atlas:pos user_account2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:10
-- atlas:pos address2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:22

CREATE TABLE user_account (id INTEGER NOT NULL AUTO_INCREMENT, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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8 changes: 4 additions & 4 deletions tests/testdata/multi_path/ddl_postgresql.sql
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@@ -1,7 +1,7 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:9
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:18
-- atlas:pos user_account2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:9
-- atlas:pos address2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:19
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:10
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/multi_path/models1/models.py:21
-- atlas:pos user_account2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:10
-- atlas:pos address2[type=table] [ABS_PATH]/tests/testdata/multi_path/models2/models.py:22

CREATE TABLE user_account (id SERIAL NOT NULL, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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5 changes: 5 additions & 0 deletions tests/testdata/multi_path/models1/models.py
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@@ -1,5 +1,6 @@
from sqlalchemy import ForeignKey, String
from sqlalchemy.orm import Mapped, mapped_column, relationship, DeclarativeBase
from clickhouse_sqlalchemy import engines


class Base(DeclarativeBase):
Expand All @@ -8,6 +9,8 @@ class Base(DeclarativeBase):

class User(Base):
__tablename__ = "user_account"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
name: Mapped[str] = mapped_column(String(30))
fullname: Mapped[str | None] = mapped_column(String(30))
Expand All @@ -17,6 +20,8 @@ class User(Base):

class Address(Base):
__tablename__ = "address"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
email_address: Mapped[str] = mapped_column(String(30))
user_id: Mapped[int] = mapped_column(ForeignKey("user_account.id"))
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5 changes: 5 additions & 0 deletions tests/testdata/multi_path/models2/models.py
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@@ -1,5 +1,6 @@
from sqlalchemy import ForeignKey, String
from sqlalchemy.orm import Mapped, mapped_column, relationship, DeclarativeBase
from clickhouse_sqlalchemy import engines


class Base(DeclarativeBase):
Expand All @@ -8,6 +9,8 @@ class Base(DeclarativeBase):

class User2(Base):
__tablename__ = "user_account2"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
name: Mapped[str] = mapped_column(String(30))
fullname: Mapped[str | None] = mapped_column(String(30))
Expand All @@ -18,6 +21,8 @@ class User2(Base):

class Address2(Base):
__tablename__ = "address2"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
email_address: Mapped[str] = mapped_column(String(30))
user_id: Mapped[int] = mapped_column(ForeignKey("user_account2.id"))
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7 changes: 7 additions & 0 deletions tests/testdata/old_models/ddl_clickhouse.sql
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@@ -0,0 +1,7 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:11
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:23

CREATE TABLE user_account (id INTEGER, name FixedString(30), fullname FixedString(30)) ENGINE = MergeTree() ORDER BY id;

CREATE TABLE address (id INTEGER, email_address FixedString(30), user_id INTEGER) ENGINE = MergeTree() ORDER BY id;

4 changes: 2 additions & 2 deletions tests/testdata/old_models/ddl_mysql.sql
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@@ -1,5 +1,5 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:10
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:20
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:11
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:23

CREATE TABLE user_account (id INTEGER NOT NULL AUTO_INCREMENT, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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4 changes: 2 additions & 2 deletions tests/testdata/old_models/ddl_postgres.sql
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@@ -1,5 +1,5 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:10
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:20
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:11
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/old_models/models.py:23

CREATE TABLE user_account (id SERIAL NOT NULL, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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5 changes: 5 additions & 0 deletions tests/testdata/old_models/models.py
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Expand Up @@ -2,13 +2,16 @@

from sqlalchemy.orm import relationship
from sqlalchemy.ext.declarative import declarative_base
from clickhouse_sqlalchemy import engines

# Using the old way of declaring a declarative base
Base = declarative_base()


class User(Base):
__tablename__ = "user_account"
__table_args__ = (engines.MergeTree(order_by="id"),)

id = Column(Integer, primary_key=True)
name = Column(String(30), nullable=False)
fullname = Column(String(30))
Expand All @@ -19,6 +22,8 @@ class User(Base):

class Address(Base):
__tablename__ = "address"
__table_args__ = (engines.MergeTree(order_by="id"),)

id = Column(Integer, primary_key=True)
email_address = Column(String(30), nullable=False)
user_id = Column(ForeignKey("user_account.id"), nullable=False)
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7 changes: 7 additions & 0 deletions tests/testdata/structured_models/ddl_clickhouse.sql
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@@ -0,0 +1,7 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:8
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:23

CREATE TABLE user_account (id INTEGER, name FixedString(30), fullname FixedString(30)) ENGINE = MergeTree() ORDER BY id;

CREATE TABLE address (id INTEGER, email_address FixedString(30), user_id INTEGER) ENGINE = MergeTree() ORDER BY id;

4 changes: 2 additions & 2 deletions tests/testdata/structured_models/ddl_mysql.sql
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@@ -1,5 +1,5 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:7
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:20
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:8
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:23

CREATE TABLE user_account (id INTEGER NOT NULL AUTO_INCREMENT, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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4 changes: 2 additions & 2 deletions tests/testdata/structured_models/ddl_postgres.sql
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@@ -1,5 +1,5 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:7
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:20
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:8
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/structured_models/models/user.py:23

CREATE TABLE user_account (id SERIAL NOT NULL, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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5 changes: 5 additions & 0 deletions tests/testdata/structured_models/models/user.py
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@@ -1,11 +1,14 @@
from typing import List, Optional
from sqlalchemy import String, ForeignKey
from sqlalchemy.orm import Mapped, mapped_column, relationship
from clickhouse_sqlalchemy import engines

from tests.testdata.structured_models.base import Base

class User(Base):
__tablename__ = "user_account"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
name: Mapped[str] = mapped_column(String(30))
fullname: Mapped[Optional[str]] = mapped_column(String(30))
Expand All @@ -19,6 +22,8 @@ def __repr__(self) -> str:

class Address(Base):
__tablename__ = "address"
__table_args__ = (engines.MergeTree(order_by="id"),)

id: Mapped[int] = mapped_column(primary_key=True)
email_address: Mapped[str] = mapped_column(String(30))
user_id: Mapped[int] = mapped_column(ForeignKey("user_account.id"))
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7 changes: 7 additions & 0 deletions tests/testdata/tables/ddl_clickhouse.sql
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@@ -0,0 +1,7 @@
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:6
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:15

CREATE TABLE user_account (id INTEGER, name FixedString(30), fullname FixedString(30)) ENGINE = MergeTree() ORDER BY id;

CREATE TABLE address (id INTEGER, email_address FixedString(30), user_id INTEGER) ENGINE = MergeTree() ORDER BY id;

4 changes: 2 additions & 2 deletions tests/testdata/tables/ddl_mysql.sql
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-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:5
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:13
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:6
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:15

CREATE TABLE user_account (id INTEGER NOT NULL AUTO_INCREMENT, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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4 changes: 2 additions & 2 deletions tests/testdata/tables/ddl_postgres.sql
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-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:5
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:13
-- atlas:pos user_account[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:6
-- atlas:pos address[type=table] [ABS_PATH]/tests/testdata/tables/tables.py:15

CREATE TABLE user_account (id SERIAL NOT NULL, name VARCHAR(30) NOT NULL, fullname VARCHAR(30), PRIMARY KEY (id));

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