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Fix Linux CI#50

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d33bs merged 3 commits intoWayScience:mainfrom
d33bs:fix-linux-ci-tests
Jul 31, 2025
Merged

Fix Linux CI#50
d33bs merged 3 commits intoWayScience:mainfrom
d33bs:fix-linux-ci-tests

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@d33bs d33bs commented Jul 29, 2025 •
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Description

We're currently seeing long runtimes without completion for Linux CI in GitHub Actions. This PR seeks to fix this challenge.

I found that if I updated the dependencies through Linux that the CI appeared to be happier about things. As part of this I updated the Dockerfile for the project and related poethepoet task.

What kind of change(s) are included?

  • Documentation (changes docs or other related content)
  • Bug fix (fixes an issue).
  • Enhancement (adds functionality).
  • Breaking change (these changes would cause existing functionality to not work as expected).

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Please ensure that all boxes are checked before indicating that this pull request is ready for review.

  • I have read and followed the CONTRIBUTING.md guidelines.
  • I have searched for existing content to ensure this is not a duplicate.
  • I have performed a self-review of these additions (including spelling, grammar, and related).
  • These changes pass all pre-commit checks.
  • I have added comments to my code to help provide understanding
  • I have added a test which covers the code changes found within this PR
  • I have deleted all non-relevant text in this pull request template.

@d33bs d33bs marked this pull request as ready for review July 30, 2025 22:23
MikeLippincott
MikeLippincott approved these changes Jul 31, 2025
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LGTM. Just wanted to check if there is a way to test for the opening of napari on a headless linux server? If not nbd! If yes - might be out of scope for this PR.

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d33bs commented Jul 31, 2025

LGTM. Just wanted to check if there is a way to test for the opening of napari on a headless linux server? If not nbd! If yes - might be out of scope for this PR.

Thanks @MikeLippincott ! It's a great question. I don't think there's an easy way to accomplish this given the headless/displayless nature of GH Actions containers. It might be possible to upload screenshots but this too might be complex (we'd need to simulate the display in a way that the container could render a screenshot without having an actual screen to send to). Some of this already occurs with our CI configuration for Linux but it's fragile and makes me a bit cautious about pushing the limits here (we could get rate-limited by GH eventually). Just the same I'll file an issue to explore this at a later time.

@d33bs d33bs mentioned this pull request Jul 31, 2025
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@d33bs d33bs merged commit 715d57d into WayScience:main Jul 31, 2025
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@d33bs d33bs deleted the fix-linux-ci-tests branch July 31, 2025 22:33
MikeLippincott pushed a commit to MikeLippincott/nViz that referenced this pull request Sep 29, 2025
@d33bs @MikeLippincott
Fix Linux CI (WayScience#50)
0b22013 
* update dockerfile for uv

* update deps and fix pre-commit config

* update dockerfile and poe task
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