Promote Staging to Main for release to production

[bkuntzelman]

No description provided.

[Copilot]

Pull request overview

This PR updates the test database schema/data and expands integration/unit test coverage to align with the current bioactivity service behavior ahead of a production release.

Changes:

• Replaced the test schema.sql with DDL for the aop, invitro, and ch schemas/tables used by the current JPA mappings and repository queries.
• Added multiple new @DataJpaTest Testcontainers-based repository tests (and expanded existing ones) for assay search, aggregates, models, AOP mappings, and analytical QC.
• Updated the test profile configuration (application-test.yml) default schema and application name; enabled H2 as a test dependency in pom.xml.

Reviewed changes

Copilot reviewed 18 out of 19 changed files in this pull request and generated 1 comment.

Show a summary per file

File	Description
src/test/resources/schema.sql	Reworked test DDL to define aop, invitro, and ch schemas/tables used by current queries.
src/test/java/gov/epa/ccte/api/bioactivity/web/rest/AssayResourceTest.java	Adds endpoint test for resolving AEID by assay endpoint name.
src/test/java/gov/epa/ccte/api/bioactivity/repository/SearchAssayRepositoryTest.java	New Testcontainers JPA test for search_assay repository behaviors.
src/test/java/gov/epa/ccte/api/bioactivity/repository/ChemicalAggRepositoryTest.java	New repository test for chemical aggregate queries.
src/test/java/gov/epa/ccte/api/bioactivity/repository/BioactivityScRepositoryTest.java	New repository test for single-concentration bioactivity data queries.
src/test/java/gov/epa/ccte/api/bioactivity/repository/BioactivityModelRepositoryTest.java	New repository test for model prediction queries.
src/test/java/gov/epa/ccte/api/bioactivity/repository/BioactivityDataRepositoryTest.java	Updates container version and expands repository query tests/projections.
src/test/java/gov/epa/ccte/api/bioactivity/repository/AssayAnnotationRepositoryTest.java	Updates imports/container version and adjusts expectations to new seeded dataset.
src/test/java/gov/epa/ccte/api/bioactivity/repository/AssayAggRepositoryTest.java	New repository test for assay aggregate + CCD projection queries.
src/test/java/gov/epa/ccte/api/bioactivity/repository/AnalyticalQCRepositoryTest.java	New repository test for analytical QC queries.
src/test/java/gov/epa/ccte/api/bioactivity/repository/AOPRepositoryTest.java	New repository test for AOP mapping queries.
src/main/resources/config/application-test.yml	Renames app and switches Hibernate default schema to invitro.
src/main/java/gov/epa/ccte/api/bioactivity/web/rest/DataApi.java	Removes OpenAPI tag metadata from operations.
src/main/java/gov/epa/ccte/api/bioactivity/web/rest/BioactivityModelApi.java	Removes OpenAPI tag metadata from operations.
src/main/java/gov/epa/ccte/api/bioactivity/web/rest/AOPApi.java	Removes OpenAPI tag metadata from operations.
src/main/java/gov/epa/ccte/api/bioactivity/repository/BioactivityDataRepository.java	Adds percentAssays to a repository query projection.
src/main/java/gov/epa/ccte/api/bioactivity/repository/AssayAggRepository.java	Adds comments; no functional change.
pom.xml	Adds H2 test dependency.

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[Copilot]

schema.sql no longer creates the app schema or the app.api_keys / app.approved_hosts objects, but those entities are still mapped with @Table(..., schema = "app") (e.g., ApiKey, ApprovedHost). With spring.jpa.properties.hibernate.ddl-auto: validate in the test profile, Hibernate will fail validation unless the app schema (and required tables/sequences) exist in the test DB. Add the missing CREATE SCHEMA app and the DDL for these mapped objects (including the approved_hosts_id_seq sequence), or adjust the entity mappings/test profile accordingly.

Suggested change

	CREATE SCHEMA app;
	-- Sequence used for ApprovedHost IDs
	CREATE SEQUENCE app.approved_hosts_id_seq
	START WITH 1
	INCREMENT BY 1
	NO MINVALUE
	NO MAXVALUE
	CACHE 1;
	-- Table for API keys mapped with @Table(schema = "app", name = "api_keys")
	CREATE TABLE app.api_keys (
	id bigint NOT NULL,
	api_key varchar(255) NOT NULL,
	created_at timestamp NULL,
	revoked_at timestamp NULL
	);
	-- Table for approved hosts mapped with @Table(schema = "app", name = "approved_hosts")
	CREATE TABLE app.approved_hosts (
	id bigint NOT NULL DEFAULT nextval('app.approved_hosts_id_seq'),
	host varchar(255) NOT NULL,
	description varchar(255) NULL
	);

[janetleeFederal]

Approving for promotion to PROD for v2.8.0.