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Kornfeld laboratory

Repository of the Kornfeld laboratory at MPI of Biological Intelligence

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  1. SyConn SyConn Public

    Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

    Python 43 8

  2. autodoc autodoc Public

    This is a repository for automatic generation of docstrings

    Python 9 1

  3. banis banis Public

    BANIS: Baseline for Affinity-based Neuron Instance Segmentation

    Python 7 4

  4. MorphX MorphX Public

    Toolkit for exploration and segmentation of 3D morphologies.

    Python 3 1

  5. kimimaro kimimaro Public

    Forked from seung-lab/kimimaro

    Skeletonize densely labeled 3D image segmentations.

    Python 1

  6. LightConvPoint LightConvPoint Public

    Forked from valeoai/LightConvPoint

    Python 1

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Showing 10 of 14 repositories
  • nisb Public
    StructuralNeurobiologyLab/nisb’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 9, 2025
  • areaX-connectomic-analysis Public

    Code to analyse connectomic datasets that are processed with SyConn

    StructuralNeurobiologyLab/areaX-connectomic-analysis’s past year of commit activity
    Python 1 GPL-2.0 0 1 0 Updated Nov 18, 2025
  • banis Public

    BANIS: Baseline for Affinity-based Neuron Instance Segmentation

    StructuralNeurobiologyLab/banis’s past year of commit activity
    Python 7 MIT 4 0 1 Updated Sep 10, 2025
  • SyConn Public

    Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

    StructuralNeurobiologyLab/SyConn’s past year of commit activity
    Python 43 GPL-2.0 8 3 2 Updated Jul 28, 2025
  • beach_collection Public
    StructuralNeurobiologyLab/beach_collection’s past year of commit activity
    Python 0 0 0 0 Updated Jul 2, 2025
  • DeepFocus Public
    StructuralNeurobiologyLab/DeepFocus’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 17, 2025
  • autodoc Public

    This is a repository for automatic generation of docstrings

    StructuralNeurobiologyLab/autodoc’s past year of commit activity
    Python 9 MIT 1 3 0 Updated Jan 29, 2024
  • SyConn2Scripts Public
    StructuralNeurobiologyLab/SyConn2Scripts’s past year of commit activity
    Python 0 0 0 0 Updated Aug 9, 2023
  • SyConn-Neuroglancer Public

    Adaptation of the WebGL-based volumetric viewer https://github.com/google/neuroglancer. Provides an analysis interface for filtering neurons based on properties, the identification of pre- and postsynaptic neurons or the listing of different cell types

    StructuralNeurobiologyLab/SyConn-Neuroglancer’s past year of commit activity
    TypeScript 1 Apache-2.0 0 1 0 Updated May 4, 2023
  • emcaps Public

    Code for the paper "Genetically encoded barcodes for correlative volume electron microscopy"

    StructuralNeurobiologyLab/emcaps’s past year of commit activity
    Python 1 MIT 1 1 0 Updated May 1, 2023
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