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Testing

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#160 In ProteinGym/proteingym-benchmark;

· karel-w opened on Feb 6, 2026

Linting

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#159 In ProteinGym/proteingym-benchmark;

· karel-w opened on Feb 6, 2026

Record metrics over all splits instead of test predictions only

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#133 In ProteinGym/proteingym-benchmark;

· florisvdf opened on Oct 15, 2025

running pg-benchmark does not take into account dataset splits.

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#114 In ProteinGym/proteingym-benchmark;

· karel-w opened on Sep 29, 2025

Verify DVC works with Slurm

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#97 In ProteinGym/proteingym-benchmark;

· JCZuurmond opened on Sep 4, 2025

When a model uses MSA, it should report which of the MSA in the dataset it was that was used

refineIssues with this tag needs refinement by team. Typically used to brain dump issues that pop upIssues with this tag needs refinement by team. Typically used to brain dump issues that pop up

Status: Open.

Feature

#85 In ProteinGym/proteingym-benchmark;

· hredestig opened on Aug 14, 2025

Create a IFF "bot" email account which manages the tokens to private repos and add comments in PRs

help wantedExtra attention is neededExtra attention is needed

Status: Open.

Bug

#57 In ProteinGym/proteingym-benchmark;

· tintinrevient opened on Jul 16, 2025

Containers/models should not be able to connect to the internet

Status: Open.

Feature

#13 In ProteinGym/proteingym-benchmark;

· JCZuurmond opened on Jun 19, 2025