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Release/v1.9.0#765

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atravitz merged 11 commits intomainfrom
release/v1.9.0
Mar 26, 2026
Merged

Release/v1.9.0#765
atravitz merged 11 commits intomainfrom
release/v1.9.0

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  • Added a news entry

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atravitz and others added 5 commits November 5, 2025 12:24
* Replace pprint with model_dump in _ipython_display_ of SettingsBaseModel (#653)

* min pin rdkit (#665)

* fix msgpack `pint.errors.OffsetUnitCalculusError` when defining in celsius (#666)

* add test that breaks

* add fix

* add news

* Added Protocol how-to doc (#594)

* Seeded protocol how-to

* Finished document, with substantial help from Claude

* Apply suggestions from code review

Co-authored-by: Alyssa Travitz <31974495+atravitz@users.noreply.github.com>

* Changes from @atravitz review

* Fix sphinx build warning

* Apply suggestion from @IAlibay

Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>

* Edits from review comments

* Added additional notes on Settings objects to protocol how-to

* Added additional notes to protocol how-to step 2

* Added more realism to ProtocolResult implementation in Protocol how-to

* Added serialization concept doc giving supported types

* Added link to serialization concept doc in tokenizable concept doc

* Added additional notes for ProtocolUnits in Protocol how-to

* Reworked ProtocolUnits example in Protocol how-to; made changes elsewhere to accommodate

* Addressed remaining reviwe comments

* precommit

* add serialization to index

---------

Co-authored-by: Alyssa Travitz <31974495+atravitz@users.noreply.github.com>
Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>
Co-authored-by: Alyssa Travitz <alyssa.travitz@omsf.io>

* expose GufeToeknizableTestsMixin (#669)

* run ci on all branches (#673)

* Updated CHANGELOG for 1.7.1

* update changelog

---------

Co-authored-by: Irfan Alibay <IAlibay@users.noreply.github.com>
Co-authored-by: David L. Dotson <dotsdl@gmail.com>
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codecov bot commented Mar 23, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 98.89%. Comparing base (f4a8f51) to head (e81e320).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #765   +/-   ##
=======================================
  Coverage   98.89%   98.89%           
=======================================
  Files          43       43           
  Lines        2705     2705           
=======================================
  Hits         2675     2675           
  Misses         30       30           

☔ View full report in Codecov by Sentry.
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@atravitz atravitz changed the base branch from stable to main March 24, 2026 23:49
@atravitz atravitz requested a review from mikemhenry March 26, 2026 14:42
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CHANGELOG looks good:
image

@atravitz atravitz closed this Mar 26, 2026
@atravitz atravitz reopened this Mar 26, 2026
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No API break detected ✅

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@mikemhenry mikemhenry left a comment

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LGTY!

@atravitz atravitz merged commit ec9643d into main Mar 26, 2026
24 checks passed
@atravitz atravitz deleted the release/v1.9.0 branch March 26, 2026 15:43
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2 participants