What's Changed
- update git ignore by @atravitz in #273
- clean up CI env and workflow by @atravitz in #272
- consolidate instructions for building networks from orion or fep+ files by @atravitz in #275
- consolidate instructions for creating an alchemical network by @atravitz in #276
- remove redundant generate_lomap_network.ipynb by @atravitz in #278
- remove unused data from networks/ dir by @atravitz in #281
- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #282
- update ligandnetwork generation notebooks by @atravitz in #274
- update cli docs for clarity and accuracy by @atravitz in #283
- add cofactor example as a cookbook by @atravitz in #284
- Using cofactors example notebook by @IAlibay in #91
Full Changelog: 2025.12.04...2026.01.26