tbtAMR identifies and reports
mutations linked to anti-microbial resistance
in M.tuberculosis from
Illumina whole genome sequencing data.
It has been accredited to
ISO-15189 standards
by
NATA
at the
MDU-PHL.
% conda create -n tbtamr -c bioconda tbtamr
% conda activate tbtamr
% tbtamr --version
% tbtamr full -s NAME -1 R1.fq.gz -2 R2.fq.gz
% cat btamr_results.csv
See our wiki page for further information on tbtamr usage.
File questions, bugs, or ideas on the Issues page.
Horan KA, Viberg L, Ballard SA, Globan M, Wirth W, Bond K, Webb JR, Dorji T, Williamson DA, Sait ML, Tay EL, Denholm JT, Howden BP, Seemann T, Sherry NL. Bringing tuberculosis genomics to the clinic: development and validation of a comprehensive pipeline to predict antimicrobial susceptibility from genomic data, accredited to ISO standards. Lancet Digital Health. 2025 Dec;7(12):100939. PMID:41436327