GitHub - Kalan-Lab/Townsend_etal_ExVivoPorcineSkinCHG: Code for data analysis and figures for the manuscript Establishing an ex vivo porcine skin model to investigate the effects of chlorhexidine gluconate antiseptic on viable skin microbial communities."

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Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
MAASLIN		MAASLIN
Aim2-qPCRallPigs.csv		Aim2-qPCRallPigs.csv
Aim2CFU_ALL.csv		Aim2CFU_ALL.csv
AllPigs_16s_Genus_Pivot.csv		AllPigs_16s_Genus_Pivot.csv
BaselineVPostInt0_DifferentialExpressionResults.csv		BaselineVPostInt0_DifferentialExpressionResults.csv
BaselineVendpoint48_DifferentialExpressionResults.csv		BaselineVendpoint48_DifferentialExpressionResults.csv
BothPigs.Key_byTime_RELATIVEABUNDANCE.Lipids.csv		BothPigs.Key_byTime_RELATIVEABUNDANCE.Lipids.csv
BothPigs.RELATIVEABUNDANCE.Lipids.csv		BothPigs.RELATIVEABUNDANCE.Lipids.csv
BothPigs.lowRELATIVEABUNDANCE.Lipids.csv		BothPigs.lowRELATIVEABUNDANCE.Lipids.csv
CompiledQubitDNA_PigCHGEx.csv		CompiledQubitDNA_PigCHGEx.csv
CompiledQubitDNA_PigOpt.csv		CompiledQubitDNA_PigOpt.csv
CompoundIDlist.csv		CompoundIDlist.csv
FullPorcineSkinLipidomicManfest.csv		FullPorcineSkinLipidomicManfest.csv
LK16S005-Aim2_P1_SequencingManufest.txt		LK16S005-Aim2_P1_SequencingManufest.txt
LK16S005-table-Aim2-dada2.qza		LK16S005-table-Aim2-dada2.qza
LK16S005-taxonomy-Aim2.qza		LK16S005-taxonomy-Aim2.qza
LK16S008-1to96-table-16S-dada2.qza		LK16S008-1to96-table-16S-dada2.qza
LK16S008-1to96-taxonomy-Aim2P2.qza		LK16S008-1to96-taxonomy-Aim2P2.qza
LK16S008-97plus-table-16S-dada2.qza		LK16S008-97plus-table-16S-dada2.qza
LK16S008-97plus-taxonomy-Aim2P3.qza		LK16S008-97plus-taxonomy-Aim2P3.qza
LK16S008_16S_1to96_manufest.txt		LK16S008_16S_1to96_manufest.txt
LK16S008_16S_97plus_manufest.txt		LK16S008_16S_97plus_manufest.txt
LK16S011-table-16S-dada2.qza		LK16S011-table-16S-dada2.qza
LK16S011-taxonomy-Aim2P3re.qza		LK16S011-taxonomy-Aim2P3re.qza
LK16S011_P3_16Sreruns_manufest.txt		LK16S011_P3_16Sreruns_manufest.txt
LipidClassMeta.csv		LipidClassMeta.csv
LipidClasses.csv		LipidClasses.csv
LipidClasses_Aim2_MetaFile_Final.csv		LipidClasses_Aim2_MetaFile_Final.csv
NegativePositiveControls.pdf		NegativePositiveControls.pdf
PMAxxOptAllResults.csv		PMAxxOptAllResults.csv
PigCHGQubitPaired.csv		PigCHGQubitPaired.csv
PorcineCHG_Lipidomics_Rcode.R		PorcineCHG_Lipidomics_Rcode.R
PorcineCHG_Microbial_Rcode.R		PorcineCHG_Microbial_Rcode.R
PostInt0VEndpoint48_DifferentialExpressionResults.csv		PostInt0VEndpoint48_DifferentialExpressionResults.csv
QubitAnalysis.R		QubitAnalysis.R
Townsend_P2_NegPos_TissueMasNorm_RELATIVEabundance.csv		Townsend_P2_NegPos_TissueMasNorm_RELATIVEabundance.csv
Townsend_P2_NegPos_TissueMassNorm_input.csv		Townsend_P2_NegPos_TissueMassNorm_input.csv
Townsend_P3_NegPos_TissueMasNorm_RELATIVEabundance.csv		Townsend_P3_NegPos_TissueMasNorm_RELATIVEabundance.csv
Townsend_P3_NegPos_TissueMassNorm_input.csv		Townsend_P3_NegPos_TissueMassNorm_input.csv

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Code for data analysis and figures for the manuscript Establishing an ex vivo porcine skin model to investigate the effects of chlorhexidine gluconate antiseptic on viable skin microbial communities."