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fix(qc): emit protospacer sequence in BED column 4 Publish docs #17: Commit 81c6db4 pushed by emattei
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fix(pipeline): correct indentation in FASTQ generation step Publish docs #16: Commit 93aa1cb pushed by emattei
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fix(qc): use protospacer sequence in BED and preserve alias read names Publish docs #15: Commit f3ba75e pushed by emattei
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fix(qc): correct reverse-strand PAM mismatch handling and seq-star se… Publish docs #14: Commit c219f72 pushed by emattei
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feat(qc): refine strand-aware filtering, bed fields, and rerun-safe p… Publish docs #13: Commit dcdff20 pushed by emattei
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feat(pipeline): organize step outputs and emit protospacer BED spans Publish docs #12: Commit 7ecfe1e pushed by emattei
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feat(pipeline): keep dual logging for slurm and local pipeline log Publish docs #11: Commit 258bb9c pushed by emattei
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docs(python): split API reference into function-level pages Publish docs #10: Commit fb5a260 pushed by emattei
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docs: add hosted documentation link to README header Publish docs #9: Commit 7b31522 pushed by emattei
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feat(qc): add alignment filtering outputs, summaries, and slurm tutorial Publish docs #8: Commit dc6d806 pushed by emattei
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feat(python): add guide QC, shell runner, and GEM mapping helpers Publish docs #7: Commit 28c00ca pushed by emattei
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docs(r): add navbar link back to main documentation Publish docs #6: Commit ad4d4fc pushed by emattei
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docs: surface R pkgdown links and verify site/r output Publish docs #5: Commit 7cdbeb2 pushed by emattei
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ci: force GitHub Actions JavaScript runtime to Node 24 Publish docs #4: Commit c06c37e pushed by emattei
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- changing the menu Publish docs #3: Commit 024f7f2 pushed by emattei
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- fixing github pages Publish docs #2: Commit f0e7345 pushed by emattei
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- pushing boilerplate Publish docs #1: Commit 9b954e0 pushed by emattei
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