Move to ElasticSearch and drop Solr/MongoDB#33

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markwoodhall wants to merge 157 commits intodevelopfrom

elastic

Commits on May 11, 2018

Start of structure for elastic indexing

kjw
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markwoodhall
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Switch to one type per index, for ES 6+ compatibility

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Use keyword and text instead of string type, for ES 5+ compatibility

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Disable _all field (not present in ES 6+ anyway)

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More complete mappings

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Rework member loading to load into ES

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index-publishers renamed to index-members

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Index journals into ES

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Remove some fields from category definition

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Index subjects into ES

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Rewrite task entry points and user functions

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Start of the ES work indexer

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Connect parse actions to ES indexing

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More complete work indexing for ES

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Mostly complete ES work indexer

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Complete ES work indexer

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Include unstructured field in references and various indexer fixes

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Insert work documents into ES

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Basic queries and DOI look up via elastic search

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Basic filters for ES queries

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Mostly working ES filters, dates in ES to citeproc convertion

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Nested filters for nested document fields

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Additional metadata in ES doc to citeproc conversion

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Add journal id to work mapping

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Working select parameter for ES

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Sorting for ES queries and re-enable debug parameter

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Report elastic client config on debug=true

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Port work filters to ES

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Working work facets in ES

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Include published-year work field for published facet

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Make all work fields keywords except those ending in .text

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Specific field queries for ES

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Reverse work look ups for ES

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Working sample paramter for ES

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Include _seq_no field for random sort (without field is deprecated)

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API cursors using ES scroll function

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Store member and journal coverage data in ES

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Rename published to issued and published-year to issued-year

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Index subjects into journal mappings

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Handle case of no print publication date

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Query for and display members from ES

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Journal query and display for ES

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Prefix search and display for ES

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Remove old code for citation checking

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Citation display decision fed by ES member data

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Remove old doaj code

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Remove old patent deposit code (now handled by event data)

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Remove mongo configuration

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Use ES to serve /types/:type-id/works

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Index feed documents into ES

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Removal of old, unused code

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Set minimum_should_match for ISSN matching

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Auto complete fields for member, journal and funder names

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Complete ES to citeproc mapping

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Display contributors correctly

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Index funders into ES. Now a single pass load

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Get funder data from ES for /funders

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Fixes for fundref namespace removal

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Remove deposits API and all mongo code

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Reference count and DOI updates for ES

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Remove /licenses route (in favour of license facet)

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Store some fields in work parent for aggregation at work level

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Add link application facet

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Use copy_to to make parent aggregation fields

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Index citation-id and book-id crm items

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New dates in selection of issued date

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Use most recent deposit date if a DOI has absolutely no other date

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Don't add nil relation or property values

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Support query clauses that need bool must_not occurrence

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Use prefix reference distribution flag

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Fix reference distribution element name

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Public references are labelled "open", not "public"

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Projectile config to avoid searching test-data

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Minimal commits required after rebasing
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Update config to match master
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Minor formatting fix
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Remove tasks no longer used by elastic implementation
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Add accoc-exists from master
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Parse coverage stats as doubles
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Add some missing index mappings
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Get hour, min, and second where applicable
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Consider same dates as master for issued date, store published date
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Store contributor sequence
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Include contributor sequence in citeproc
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Store journal language and item source
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Replace many used of assoc with assoc-exists, to match master
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Unparse date with no milliseconds
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Make deposited and first-deposited implementation the same as master
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Update member name, prefix, and location to match master
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Add support for member coverage when fetching more than one member
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Add breakdown, subjects defaults to empty vector, coverage support when fetching more than one journal
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Use should instead of filter to influence score
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Don't wait forever when indexing if counts don't match
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docker-compose down before starting system
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Renames and formatting
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Formatting and whitespace fixes
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Port peer review from master
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Port institutions from master
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Port journal-issue from master
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Port free-to-read to master
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published-print should be explicit or default
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ORCID should include URI as per master, optionally include authenticated-orcid
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Remove rel from citeproc relations
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Port crossmark-unaware content-domains from master
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Add missing institution index mapping
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Only get date-parts for various published dates
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Default titles so output matches master, always assoc publisher
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Integer is not applicable for reference year
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Use match query for field queries
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Add score to the list of selectable scores
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Formatting
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Add sorter to api-get
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Keep waiting for indexing while doc count increases
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Remove extra fields from title text
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Make loading differnt corpus data easier
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Add citation matching tests
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Formatting
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Update assertion data for minor elastic variations
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Institution and assertion don't need to be nested
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Disble xpack security
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Add a simple test to prove sample still works
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Debug message
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Port missing agency fix from master
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Bring funder indexing and api in line with master
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Formatting
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Formatting
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Fix typo in rdf node name
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Support hierarchy and hierarchy names as per master
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Fully implement funder hierarchy
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Wait for funder to be indexed
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Sort funder data for deterministic compare
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Update works assertion data
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Extract long doi for transform resources
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expose issn type as :type not :kind
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Remove score comparsion from certain works tests
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Use one shard for work index
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Add helper function to pretty print resource to path
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Remove score comparison from journal work test
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Add breakdowns to member coverage
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Update subtypes for books
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Ignore score during member works test
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Update assertion data to reflect isbn and type fixes
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Remove load-test-journals
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Set cr-funder-registry on start
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Delay to give coverage time to index
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Update test corpus after rebase
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Remove solr and outdated test documentation from readme
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Fix typo
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Commits on Jul 11, 2018

Commits on Jul 12, 2018

Commits on Jul 13, 2018

Commits on Jul 24, 2018

Add complete count-types and coverage-type implementation
markwoodhall
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Commits on Jul 25, 2018

Fix failing funder works test
markwoodhall
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