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methylation state not shown #97

@gbeltrant

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@gbeltrant

Hello,

I have an issue about the outputs, I already did the DMR calling for all the samples and treatments that I have, I know that I can do more analyses by subsampling from the DMRcalling using the option of reidentify-DMR. But here I have a doubt. When I do the reidentify-DMR in a couple of treatments of interest I can have also the information if they are hyper or hypomethylated but sometimes this information is missing like here

#chr start end number_of_dms hypermethylated_samples hypomethylated_samples
Fvb1 61392 61405 3 RCPCO
Fvb1 231644 231757 3 RMPCO
Fvb1 377565 377649 3 RMPCO
Fvb1 388459 388504 3 RCPCO RMPCO
Fvb1 439936 440166 7 RMPCO
Fvb1 463506 463937 4 RMPCO
Fvb1 497815 498050 3 RMPCO
Fvb1 741828 741834 3 RCPCO RMPCO
Fvb1 792822 792864 4 RMPCO

What does it mean if they are not shown? This I don't understand    

As and additional info here is my DMRfind with all the samples

#chr  start end   number_of_dms     hypermethylated_samples hypomethylated_samples  methylation_level_RCPCO methylation_level_RMPCO methylation_level_RCPMO methylation_level_RMPMO methylation_level_SCPCO methylation_level_SMPCO methylation_level_SCPMO methylation_level_SMPMO
Fvb1  61392 61405 3     "RCPMO,RCPCO"     "SMPCO,SCPMO"     0.3893805309734513      0.24347826086956523     0.4   0.3148148148148148      0.022727272727272728    0.041666666666666664    0.037735849 0.14018691588785046
Fvb1  114263      114745      6     "SCPMO,SMPMO"     "RCPCO,SCPCO,RCPMO,RMPCO"     0.4041994750656168      0.42411642411642414     0.3605769230769231      0.5   0.42144638403990026     0.4110429447852761      0.5816326530612245      0.4808080808080808
Fvb1  120031      120068      3     "SMPCO,RCPMO"     "SMPMO,SCPCO"     0.7583892617449665      0.6165413533834586      0.7894736842105263      0.7724137931034483      0.5793103448275863      0.8148148148148148      0.6356589147286822      0.673202614
Fvb1  231644      231757      3     RMPCO "SMPCO,SCPCO"     0.7808219178082192      0.8578947368421053      0.7843137254901961      0.6257309941520468      0.5632911392405063      0.46099290780141844     0.6733333333333333      0.7661691542288557
Fvb1  375260      375271      3     "RCPCO,RMPCO"     "RMPMO,SMPMO"     0.7319587628865979      0.8205128205128205      0.4175824175824176      0.3333333333333333      0.5865384615384616      0.5783132530120482      0.4852941176470588      0.2785714285714286
Fvb1  377565      377649      3     "RMPCO,RCPMO,SCPCO"     "SMPCO,SCPMO"     0.5522388059701493      0.6666666666666666      0.7123287671232876      0.35526315789473684     0.6883116883116883      0.23376623376623376     0.2535211267605634      0.48484848484848486
Fvb1  439936      439989      3     "RMPCO,SCPCO,RCPMO"     SMPMO 0.39552238805970147     0.31868131868131866     0.4217687074829932      0.2967032967032967      0.4235294117647059      0.3357664233576642      0.22839506172839505     0.071005917
Fvb1  440132      440166      4     "SCPCO,SMPMO,RMPCO"     "RCPMO,SCPMO"     0.3627450980392157      0.4931506849315068      0.10344827586206896     0.20567375886524822     0.4462809917355372      0.3125      0.2608695652173913      0.512396694
Fvb1  449345      449431      4     "RCPMO,SMPCO"     "SCPMO,RMPCO"     0.817258883 0.8080808080808081      0.9484536082474226      0.8716981132075472      0.9132231404958677      0.9333333333333333      0.5118110236220472      0.7684210526315789

hope you can help me understand and solve this problem

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