swne/NAMESPACE at master · yanwu2014/swne · GitHub

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# Generated by roxygen2: do not edit by hand

S3method(RunSWNE,Pagoda2)
S3method(RunSWNE,Seurat)
S3method(RunSWNE,cisTopic)
S3method(RunSWNE,dgCMatrix)
S3method(RunSWNE,dgTMatrix)
S3method(RunSWNE,matrix)
export(AdjustVariance)
export(BuildPAGA)
export(CalcGenesetLoadings)
export(CalcKNN)
export(CalcSNN)
export(CheckGeneEmbedding)
export(EmbedFeatures)
export(EmbedPromoters)
export(EmbedSWNE)
export(EmbedTFBS)
export(ExtractField)
export(ExtractNormCounts)
export(ExtractSWNEColors)
export(FactorAssociation)
export(FeaturePlotDims)
export(FeaturePlotSWNE)
export(FilterData)
export(FilterGenesets)
export(FindNumFactors)
export(FlattenGroups)
export(MutualInf)
export(NormalizeCounts)
export(PartitionSimilarityGraph)
export(PlotDims)
export(PlotFactorSelection)
export(PlotSWNE)
export(ProjectFeatures)
export(ProjectGenesets)
export(ProjectSNN)
export(ProjectSWNE)
export(ProjectSamples)
export(PruneSNN)
export(Read10XHuman)
export(ReadData)
export(ReadGenesets)
export(ReadGroups)
export(RenameFactors)
export(RunGSEA)
export(RunNMF)
export(RunSWNE)
export(ScaleCounts)
export(SelectFeatures)
export(SelectGenesets)
export(SummarizeAssocFeatures)
export(UnflattenDataframe)
export(UnflattenGroups)
export(WriteGenesets)
export(WriteGroups)
export(ggBarplot)
export(ggHeat)
import(MASS)
import(Matrix)
import(NNLM)
import(RColorBrewer)
import(compiler)
import(ggplot2)
import(ggrepel)
import(igraph)
import(irlba)
import(liger)
import(methods)
import(reshape2)
import(snow)
import(umap)
importFrom(FNN,get.knn)
importFrom(Matrix,sparseMatrix)
importFrom(Rcpp,evalCpp)
importFrom(ica,icafast)
importFrom(irlba,irlba)
importFrom(mgcv,gam)
importFrom(plyr,revalue)
importFrom(proxy,dist)
importFrom(proxy,simil)
importFrom(reshape2,acast)
importFrom(usedist,dist_make)
useDynLib(swne)