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Check that all notebook examples work as expected #302

@djinnome

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@djinnome

Based on feedback from @bgyori :

Hello,

I think the paper is good, I PR-ed a few small edits but nothing major. I do think that given the JOSS reviewer checklist, more scrutiny will be given to the repo (installation, documentation, contribution guidelines, examples, notebooks etc.). I looked at the README and some notebooks and found some potential issues with the README code examples where I also made a PR but I think a more general review of these would be useful. Let me know if there is anything else I can help with!

Best,
Ben

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