pyproject.toml

[build-system]
requires = ["setuptools>=61", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "crest4"
version = "4.4.6"

description = """The `crest4` python package can automatically assign \
taxonomic names to DNA sequences obtained from environmental sequencing."""
readme = "README.md"
requires-python = ">=3.10"
license = { file = "LICENSE" }

authors = [
  { name = "Anders Lanzén", email = "anders.lanzen@gmail.com" },
  { name = "Lucas Sinclair", email = "lucas.sinclair@me.com" }
]

urls = { Homepage = "https://github.com/xapple/crest4/" }

dependencies = [
  "autopaths>=1.6.3",
  "plumbing>=2.11.4",
  "fasta>=2.3.6",
  "seqsearch>=2.2.4",
  "optmagic>=1.1.1",
  "biopython>=1.86",
  "rich>=14.2.0",
  "ete4>=4.3.0",
  "pandas>=2.3.3",
  "pytest>=9.0.2",
  "pytest-asyncio>=1.3.0",
]

classifiers = [
  "Topic :: Scientific/Engineering :: Bio-Informatics"
]

[project.scripts]
crest4 = "crest4.__main__:main"

# Tell setuptools to include package data and use MANIFEST.in #
[tool.setuptools]
include-package-data = true

# Package discovery (equivalent to find_namespace_packages()) #
[tool.setuptools.packages.find]

# If crest4 is a (implicit) namespace package, this finds it and its
# subpackages. If you know the top package, you can be explicit:
include = ["crest4*"]