Tests #2521
Workflow file for this run
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| name: Tests | |
| on: | |
| pull_request: | |
| push: | |
| branches: [main, test] | |
| merge_group: | |
| jobs: | |
| pre-commit: | |
| name: Lint | |
| uses: tskit-dev/.github/.github/workflows/lint.yml@v2 | |
| test: | |
| name: Python | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: [ "3.10", 3.14 ] | |
| os: [ macos-latest, ubuntu-24.04, windows-latest ] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@0.13.0 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Checkout | |
| uses: actions/checkout@v6.0.2 | |
| with: | |
| submodules: true | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v6.1.0 | |
| with: | |
| python-version: "${{ matrix.python }}" | |
| - name: Fix windows symlinks | |
| # This is horrible, but the "git config core.symlinks true" didn't work. | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| rm lwt_interface | |
| cp -r --dereference git-submodules/tskit/python/lwt_interface ./lwt_interface | |
| - name: Install GSL (macOS) | |
| if: matrix.os == 'macos-latest' | |
| run: brew install gsl | |
| - name: Install GSL (Windows) | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| vcpkg install gsl:x64-windows | |
| # Add GSL DLL directory to PATH for runtime | |
| $vcpkgRoot = $env:VCPKG_INSTALLATION_ROOT | |
| if (-not $vcpkgRoot) { $vcpkgRoot = "C:\vcpkg" } | |
| $gslBinPath = Join-Path $vcpkgRoot "installed\x64-windows\bin" | |
| echo "$gslBinPath" >> $env:GITHUB_PATH | |
| Write-Output "Added to PATH: $gslBinPath" | |
| shell: powershell | |
| - name: Install GSL (Ubuntu) | |
| if: matrix.os == 'ubuntu-24.04' | |
| run: sudo apt-get update && sudo apt-get install -y libgsl-dev | |
| - name: Install pip deps | |
| run: | | |
| pip install uv | |
| uv pip install --system -r pyproject.toml --extra test | |
| - name: Build module | |
| run: | | |
| python setup.py build_ext --inplace | |
| - name: Fix windows gsl dlls | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| cp /c/vcpkg/installed/x64-windows/bin/gsl*.dll msprime/ | |
| - name: Run tests | |
| run: | | |
| pytest -xvs -n0 |