Merge branch 'release/v3.6.5'

Author: szaghi

.checkignore

@@ -1,61 +1,88 @@
-# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
-# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
-
+# Build, install, and smoke-test FoBiS.py across the supported Python/OS matrix.
 name: Python package
 
 on:
   push:
     branches: [ master ]
+    tags: [ 'v*' ]
   pull_request:
     branches: [ master ]
 
 jobs:
-  build:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4.2.2
+    - uses: actions/setup-python@v5.6.0
+      with:
+        python-version: "3.12"
+    - name: Install ruff
+      run: pip install ruff
+    - name: Lint
+      run: ruff check fobis/ tests/
+    - name: Format check
+      run: ruff format --check fobis/ tests/
+
+  test:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4.2.2
+    - uses: actions/setup-python@v5.6.0
+      with:
+        python-version: "3.12"
+    - name: Install gfortran
+      run: sudo apt-get install -y gfortran
+    - name: Install package + test deps
+      run: pip install -e ".[dev]"
+    - name: Run pytest
+      run: pytest
 
+  build:
     runs-on: ${{ matrix.os }}
-    permissions:
-      contents: write
     strategy:
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
         python-version: ['3.9', '3.10', '3.11', '3.12']
 
     steps:
     - uses: actions/checkout@v4.2.2
+
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v5.6.0
       with:
         python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        pip install pybuilder
-    - name: Install dependencies (python 3.12)
-      if: contains( matrix.python-version, 12 )
-      run: |
-        pip install setuptools colorama
-    - name: Test build package
-      run: |
-        pyb
-    - name: Test install package on Linux/macOS
-      if: startsWith(runner.os, 'Linux') || startsWith(runner.os, 'macOS')
-      run: |
-        cd release
-        cd $(ls -d FoBiS-*)
-        pip install .
-    - name: Test install package on Windows
-      if: startsWith(runner.os, 'Windows')
-      run: |
-        cd release
-        cd $(ls -Directory FoBiS-*)
-        pip install .
+
+    - name: Install package
+      run: pip install -e .
+
     - name: Test fobis entry point
       run: |
         python --version
         pip list
         fobis -v
         fobis --help
+
     - name: Test FoBiS.py entry point (Linux/macOS only)
       if: startsWith(runner.os, 'Linux') || startsWith(runner.os, 'macOS')
       run: |
         FoBiS.py -v
         FoBiS.py --help
+
+  publish:
+    needs: [lint, test, build]
+    runs-on: ubuntu-latest
+    if: startsWith(github.ref, 'refs/tags/v')
+    environment: release
+    permissions:
+      id-token: write   # required for OIDC Trusted Publisher
+    steps:
+    - uses: actions/checkout@v4.2.2
+    - uses: actions/setup-python@v5.6.0
+      with:
+        python-version: "3.12"
+    - name: Build distribution
+      run: |
+        pip install build
+        python -m build
+    - name: Publish to PyPI
+      uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/python-package.yml

@@ -0,0 +1,131 @@
+# Changelog
+
+All notable changes to FoBiS.py are documented here.
+Versions follow [Semantic Versioning](https://semver.org/).
+Format follows [Keep a Changelog](https://keepachangelog.com/).
+
+## [3.6.5] — 2026-03-16
+### Changed
+- Flatten source layout to standard Python conventions
+
+
+### release
+- Modernise bump.sh and add git-cliff changelog
+
+
+## [3.6.2] — 2026-03-15
+### Fixed
+- **deps**: Remove deprecated typer[all] extra
+
+
+## [3.6.0] — 2026-03-15
+### Added
+- **cli**: Replace argparse with Typer; add shell autocomplete ⚠ BREAKING CHANGE
+
+
+## [3.5.4] — 2026-03-05
+### Fixed
+- **builder**: Include transitive deps of submodules in link command
+
+
+## [3.5.3] — 2026-02-27
+### Fixed
+- **fetch**: Fix deps_dir treated as dependency and missing update
+
+
+## [3.5.2] — 2026-02-27
+### Added
+- **fetch**: Add per-dependency use=sources|fobos integration mode
+
+
+## [3.5.1] — 2026-02-27
+### Added
+- **builder**: Add configurable archiver and ranlib for static libraries
+
+
+## [3.5.0] — 2026-02-27
+### Added
+- **fobos**: Support multiple templates and detect circular references
+
+
+## [3.4.1] — 2026-02-27
+### Added
+- **fobos**: Add optional [project] section with name and authors
+
+- **fobos**: Add version option to [project] section with git tag sync
+
+- **fobos**: Add summary option to [project] section
+
+- **fobos**: Add repository option to [project] section for remote url
+
+- **fobos**: Add website option to [project] section
+
+- **fobos**: Add email option to [project] section
+
+
+### Documentation
+- **fobos**: Add [project] section reference page with all options
+
+
+## [3.4.0] — 2026-02-27
+### Added
+- **install**: Add GitHub-hosted project install via fobis install <repo>
+
+
+## [3.3.4] — 2026-02-26
+### Documentation
+- **readme**: Add link to github pages documentation site
+
+
+## [3.3.3] — 2026-02-26
+### Documentation
+- **readme**: Rewrite readme to mirror the vitepress landing page
+
+
+## [3.3.2] — 2026-02-26
+### Documentation
+- Add vitepress documentation site with gh pages deployment
+
+
+## [3.3.1] — 2026-02-26
+### Fixed
+- **ci**: Fix FoBiS.py command not found on Windows runners
+
+
+## [3.3.0] — 2026-02-26
+### Added
+- **fetch**: Add fetch subcommand for GitHub Fortran dep management
+
+
+## [3.2.2] — 2026-02-26
+### Added
+- **setup**: Add fobis console script entry point
+
+
+## [3.2.1] — 2026-02-20
+### Fixed
+- **gcov**: Remove unused past.utils import that broke CI
+
+- **bump.sh**: Prevent mid-release failure due to stale branches and PyPI filename change
+
+
+## [3.2.0] — 2026-02-20
+### Added
+- **gcov**: Add mermaid pie charts to markdown coverage reports
+
+
+## [3.1.0] — 2025-05-20
+### Added
+- Add AMD flang support
+
+- **fobos**: Refactor fobos templates handling
+
+
+## [3.0.6] — 2024-11-05
+### bugfix
+- Open file encoding options differences python 2.X vs 3.X
+
+- Fix bug of preprocessing parsed files
+
+
+