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stschiffstschiff
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reactivated docker build for testing
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‎.github/workflows/release.yaml‎

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@@ -22,90 +22,90 @@ jobs:
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name: Release ${{ github.ref_name }}
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draft: true
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build_normal_artifacts:
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needs: [create_release]
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name: ${{ matrix.os }}/${{ github.ref }}
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: [ubuntu-latest, ubuntu-24.04-arm, macOS-15-intel, macOS-latest, windows-latest]
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steps:
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- name: Check out code
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uses: actions/checkout@v4
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- name: Set tag name
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uses: olegtarasov/get-tag@v2.1
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id: tagName
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with:
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tagRegex: "v(.*)"
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tagRegexGroup: 1
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- name: Install stack on macOS, where it is not present (https://github.com/freckle/stack-action/issues/80)
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if: ${{ runner.os == 'macOS' }}
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run: curl -sSL https://get.haskellstack.org/ | sh
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- name: Build executable
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uses: freckle/stack-action@v5
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id: stack
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with:
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test: false
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stack-build-arguments: --copy-bins --ghc-options="-O2"
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- name: Set binary path names
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id: binarypaths
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run: |
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binaries=()
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for TOOL in pileupCaller vcf2eigenstrat genoStats; do
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if [ "$RUNNER_OS" == "Windows" ]; then
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newEXE="$TOOL-$RUNNER_OS.exe"
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else
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newEXE="$TOOL-$RUNNER_OS-$RUNNER_ARCH"
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fi
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currentEXE="${{ steps.stack.outputs.local-bin }}/$TOOL"
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mv "$currentEXE" "$newEXE"
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binaries+=("$newEXE")
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done
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# join with commas for release-action
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binary_paths=$(printf "%s," "${binaries[@]}")
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binary_paths=${binary_paths%,}
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echo "BINARY_PATHS=$binary_paths" >> "$GITHUB_OUTPUT"
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shell: bash
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- name: Upload Release Assets
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uses: ncipollo/release-action@v1
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with:
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name: Release ${{ github.ref_name }}
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draft: true
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allowUpdates: true
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artifactErrorsFailBuild: true
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artifacts: ${{ steps.binarypaths.outputs.BINARY_PATHS }}
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artifactContentType: application/octet-stream
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# build_centos_artifact:
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# build_normal_artifacts:
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# needs: [create_release]
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# runs-on: ubuntu-latest
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# name: ${{ matrix.os }}/${{ github.ref }}
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# runs-on: ${{ matrix.os }}
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# strategy:
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# matrix:
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# os: [ubuntu-latest, ubuntu-24.04-arm, macOS-15-intel, macOS-latest, windows-latest]
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# steps:
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# - name: Checkout repo
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# - name: Check out code
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# uses: actions/checkout@v4
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# - name: Build Docker image
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# run: docker build -t linux -f .github/workflows/Dockerfile.centos .
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# - name: Create container
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# run: docker create --name linuxcontainer linux
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# - name: Set tag name
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# uses: olegtarasov/get-tag@v2.1
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# id: tagName
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# with:
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# tagRegex: "v(.*)"
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# tagRegexGroup: 1
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# - name: Copy executable
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# run: docker cp linuxcontainer:/root/.local/bin/pileupCaller pileupCaller-conda-linux
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# - name: Install stack on macOS, where it is not present (https://github.com/freckle/stack-action/issues/80)
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# if: ${{ runner.os == 'macOS' }}
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# run: curl -sSL https://get.haskellstack.org/ | sh
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# - name: Upload Release Asset
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# id: upload-release-asset
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# - name: Build executable
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# uses: freckle/stack-action@v5
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# id: stack
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# with:
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# test: false
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# stack-build-arguments: --copy-bins --ghc-options="-O2"
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# - name: Set binary path names
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# id: binarypaths
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# run: |
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# binaries=()
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# for TOOL in pileupCaller vcf2eigenstrat genoStats; do
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# if [ "$RUNNER_OS" == "Windows" ]; then
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# newEXE="$TOOL-$RUNNER_OS.exe"
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# else
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# newEXE="$TOOL-$RUNNER_OS-$RUNNER_ARCH"
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# fi
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# currentEXE="${{ steps.stack.outputs.local-bin }}/$TOOL"
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# mv "$currentEXE" "$newEXE"
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# binaries+=("$newEXE")
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# done
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# # join with commas for release-action
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# binary_paths=$(printf "%s," "${binaries[@]}")
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# binary_paths=${binary_paths%,}
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# echo "BINARY_PATHS=$binary_paths" >> "$GITHUB_OUTPUT"
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# shell: bash
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# - name: Upload Release Assets
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# uses: ncipollo/release-action@v1
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# with:
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# name: Release ${{ github.ref_name }}
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# draft: true
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# allowUpdates: true
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# artifactErrorsFailBuild: true
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# artifacts: pileupCaller-conda-linux
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# artifactContentType: application/octet-stream
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# artifacts: ${{ steps.binarypaths.outputs.BINARY_PATHS }}
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# artifactContentType: application/octet-stream
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build_centos_artifact:
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needs: [create_release]
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runs-on: ubuntu-latest
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steps:
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- name: Checkout repo
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uses: actions/checkout@v4
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- name: Build Docker image
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run: docker build -t linux -f .github/workflows/Dockerfile.centos .
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- name: Create container
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run: docker create --name linuxcontainer linux
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- name: Copy executable
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run: docker cp linuxcontainer:/root/.local/bin/pileupCaller pileupCaller-conda-linux
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- name: Upload Release Asset
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id: upload-release-asset
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uses: ncipollo/release-action@v1
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with:
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name: Release ${{ github.ref_name }}
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draft: true
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allowUpdates: true
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artifactErrorsFailBuild: true
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artifacts: pileupCaller-conda-linux
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artifactContentType: application/octet-stream

‎Dockerfile.linux‎

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