updated conda docker to build all three executables #67
Workflow file for this run
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| name: Release | |
| on: | |
| # Trigger the workflow on the new 'v*' tag created | |
| push: | |
| tags: | |
| - "v*" | |
| workflow_dispatch: | |
| jobs: | |
| create_release: | |
| name: Create Github Release | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| - name: Create Release | |
| id: create_release | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| name: Release ${{ github.ref_name }} | |
| draft: true | |
| build_normal_artifacts: | |
| needs: [create_release] | |
| name: ${{ matrix.os }}/${{ github.ref }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, ubuntu-24.04-arm, macOS-15-intel, macOS-latest, windows-latest] | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| - name: Set tag name | |
| uses: olegtarasov/get-tag@v2.1 | |
| id: tagName | |
| with: | |
| tagRegex: "v(.*)" | |
| tagRegexGroup: 1 | |
| - name: Install stack on macOS, where it is not present (https://github.com/freckle/stack-action/issues/80) | |
| if: ${{ runner.os == 'macOS' }} | |
| run: curl -sSL https://get.haskellstack.org/ | sh | |
| - name: Build executable | |
| uses: freckle/stack-action@v5 | |
| id: stack | |
| with: | |
| test: false | |
| stack-build-arguments: --copy-bins --ghc-options="-O2" | |
| - name: Set binary path names | |
| id: binarypaths | |
| run: | | |
| binaries=() | |
| for TOOL in pileupCaller vcf2eigenstrat genoStats; do | |
| if [ "$RUNNER_OS" == "Windows" ]; then | |
| newEXE="$TOOL-$RUNNER_OS.exe" | |
| else | |
| newEXE="$TOOL-$RUNNER_OS-$RUNNER_ARCH" | |
| fi | |
| currentEXE="${{ steps.stack.outputs.local-bin }}/$TOOL" | |
| mv "$currentEXE" "$newEXE" | |
| binaries+=("$newEXE") | |
| done | |
| # join with commas for release-action | |
| binary_paths=$(printf "%s," "${binaries[@]}") | |
| binary_paths=${binary_paths%,} | |
| echo "BINARY_PATHS=$binary_paths" >> "$GITHUB_OUTPUT" | |
| shell: bash | |
| - name: Upload Release Assets | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| name: Release ${{ github.ref_name }} | |
| draft: true | |
| allowUpdates: true | |
| artifactErrorsFailBuild: true | |
| artifacts: ${{ steps.binarypaths.outputs.BINARY_PATHS }} | |
| artifactContentType: application/octet-stream | |
| build_centos_artifact: | |
| needs: [create_release] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Build Docker image | |
| run: docker build -t linux -f .github/workflows/Dockerfile.centos . | |
| - name: Create container | |
| run: docker create --name linuxcontainer linux | |
| - name: Copy executable | |
| run: | | |
| docker cp linuxcontainer:/root/.local/bin/pileupCaller pileupCaller-conda-linux | |
| docker cp linuxcontainer:/root/.local/bin/genoStats genoStats-conda-linux | |
| docker cp linuxcontainer:/root/.local/bin/vcf2eigenstrat vcf2eigenstrat-conda-linux | |
| echo "BINARY_PATHS=pileupCaller-conda-linux,genoStats-conda-linux,vcf2eigenstrat-conda-linux" >> "$GITHUB_OUTPUT" | |
| shell: bash | |
| - name: Upload Release Asset | |
| id: upload-release-asset | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| name: Release ${{ github.ref_name }} | |
| draft: true | |
| allowUpdates: true | |
| artifactErrorsFailBuild: true | |
| artifacts: ${{ steps.binarypaths.outputs.BINARY_PATHS }} | |
| artifactContentType: application/octet-stream | |