susieR/pixi.toml at master · stephenslab/susieR · GitHub

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[workspace]
name = "r-susier"
channels = ["dnachun", "conda-forge", "bioconda"]
platforms = ["linux-64", "osx-arm64"]

[system-requirements]
libc = { family="glibc", version="2.17" }

[tasks]
devtools_document = "cd $GITHUB_WORKSPACE; R -e 'devtools::document()'"
devtools_test = "cd $GITHUB_WORKSPACE; R -e 'devtools::test()'"
codecov = "cd $GITHUB_WORKSPACE; R -e 'covr::codecov(quiet = FALSE)'"
build = "cd $GITHUB_WORKSPACE; R -e 'devtools::build(vignettes = TRUE)'"
rcmdcheck = "cd $GITHUB_WORKSPACE; R -e 'pkg <- list.files(\"..\", pattern = \".tar.gz\", full.names = TRUE); rcmdcheck::rcmdcheck(path = pkg[1], args = c(\"--as-cran\", \"--no-manual\"))'"
use_major_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"major\", push = FALSE)'"
use_minor_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"minor\", push = FALSE)'"
use_patch_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"patch\", push = FALSE)'"
pkgdown_build = "cd $GITHUB_WORKSPACE; R -e 'pkgdown::build_site_github_pages(new_process = FALSE, install = TRUE)'"

[feature.r44]
dependencies = {"r-base" = "4.4.*"}

[feature.r45]
dependencies = {"r-base" = "4.5.*"}

[environments]
r44 = {features = ["r44"]}
r45 = {features = ["r45"]}

[target.linux-64.dependencies]
"gcc" = "*"

[dependencies]
# Core dependencies (from Imports)
"r-rcpp" = "*"
"r-rcpparmadillo" = "*"
"r-matrix" = "*"
"r-matrixstats" = "*"
"r-mixsqp" = "*"
"r-reshape" = "*"
"r-crayon" = "*"
"r-ggplot2" = "*"
"r-l0learn" = "*"
"r-glmnet" = "*"
"r-survival" = "*"

# Suggested dependencies (for testing and documentation)
"r-curl" = "*"
"r-testthat" = "*"
"r-microbenchmark" = "*"
"r-knitr" = "*"
"r-rmarkdown" = "*"
"r-rfast" = "*"
"r-cowplot" = "*"

# Development tools (optional, but useful for package development)
"r-devtools" = "*"
"r-covr" = "*"
"r-rcmdcheck" = "*"
"r-pkgdown" = "*"
"qpdf" = "*"