Skip to content

Commit 7519198

Browse files
Merge pull request #70 from Xiaoyi-ZHANG23/main
Upload BlockPocket Example
2 parents 4c05f0a + 5c049ba commit 7519198

File tree

216 files changed

+197033
-0
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

216 files changed

+197033
-0
lines changed

Examples/BlockPocket/AllData/System_0/Component_0.data

Lines changed: 577 additions & 0 deletions
Large diffs are not rendered by default.
Lines changed: 133 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,133 @@
1+
x y z charge scale scaleCoul Type
2+
0 0 3.52247 9.10234 20.258 0 1 1 103
3+
0 1 3.75764 9.20641 19.1381 0 1 1 102
4+
0 2 3.99282 9.31048 18.0183 0 1 1 103
5+
1 0 4.79609 16.1273 8.68629 0 1 1 103
6+
1 1 4.99794 17.1412 9.18787 0 1 1 102
7+
1 2 5.1998 18.155 9.68945 0 1 1 103
8+
2 0 17.2794 22.6774 18.2026 0 1 1 103
9+
2 1 17.8282 23.6806 18.0908 0 1 1 102
10+
2 2 18.377 24.6839 17.9791 0 1 1 103
11+
3 0 14.7537 17.3992 19.4374 0 1 1 103
12+
3 1 15.5509 17.72 20.2001 0 1 1 102
13+
3 2 16.3481 18.0408 20.9628 0 1 1 103
14+
4 0 4.83891 21.0152 19.9254 0 1 1 103
15+
4 1 3.84498 20.705 20.4113 0 1 1 102
16+
4 2 2.85104 20.3948 20.8971 0 1 1 103
17+
5 0 5.86127 13.9376 6.69721 0 1 1 103
18+
5 1 6.13682 12.8707 6.3716 0 1 1 102
19+
5 2 6.41238 11.8038 6.04599 0 1 1 103
20+
6 0 3.49535 15.8037 19.2144 0 1 1 103
21+
6 1 4.09632 16.003 20.1732 0 1 1 102
22+
6 2 4.69728 16.2023 21.132 0 1 1 103
23+
7 0 19.4056 16.3998 7.88992 0 1 1 103
24+
7 1 20.4375 16.5428 7.40531 0 1 1 102
25+
7 2 21.4695 16.6859 6.9207 0 1 1 103
26+
8 0 5.41823 15.586 3.04678 0 1 1 103
27+
8 1 4.52891 15.983 3.65646 0 1 1 102
28+
8 2 3.6396 16.38 4.26615 0 1 1 103
29+
9 0 7.64147 3.37765 19.2562 0 1 1 103
30+
9 1 6.58324 3.69004 18.9356 0 1 1 102
31+
9 2 5.52501 4.00243 18.615 0 1 1 103
32+
10 0 6.73786 3.24983 15.6144 0 1 1 103
33+
10 1 7.79653 3.44906 16.0141 0 1 1 102
34+
10 2 8.85521 3.64828 16.4137 0 1 1 103
35+
11 0 5.92601 11.9932 18.7252 0 1 1 103
36+
11 1 5.87033 13.1204 18.5095 0 1 1 102
37+
11 2 5.81464 14.2476 18.2938 0 1 1 103
38+
12 0 18.0231 6.16674 23.8679 0 1 1 103
39+
12 1 18.6714 5.6097 23.1 0 1 1 102
40+
12 2 19.3197 5.05266 22.3321 0 1 1 103
41+
13 0 19.0811 16.0384 21.5069 0 1 1 103
42+
13 1 20.1487 15.9001 21.1054 0 1 1 102
43+
13 2 21.2164 15.7619 20.7038 0 1 1 103
44+
14 0 9.24935 17.8033 19.0918 0 1 1 103
45+
14 1 8.89514 17.1504 19.9684 0 1 1 102
46+
14 2 8.54093 16.4974 20.845 0 1 1 103
47+
15 0 9.52413 21.231 18.2936 0 1 1 103
48+
15 1 9.08613 21.0359 17.2494 0 1 1 102
49+
15 2 8.64812 20.8409 16.2052 0 1 1 103
50+
16 0 4.1798 3.99881 2.82875 0 1 1 103
51+
16 1 3.74612 3.75523 3.86451 0 1 1 102
52+
16 2 3.31245 3.51166 4.90027 0 1 1 103
53+
17 0 13.0456 5.78072 6.17592 0 1 1 103
54+
17 1 11.9935 6.23508 6.09329 0 1 1 102
55+
17 2 10.9414 6.68944 6.01066 0 1 1 103
56+
18 0 6.59529 6.55509 13.993 0 1 1 103
57+
18 1 5.60721 6.35671 14.5449 0 1 1 102
58+
18 2 4.61912 6.15833 15.0967 0 1 1 103
59+
19 0 20.276 3.81293 4.97139 0 1 1 103
60+
19 1 19.7603 3.91338 3.94956 0 1 1 102
61+
19 2 19.2446 4.01383 2.92772 0 1 1 103
62+
20 0 21.0918 20.4114 20.7028 0 1 1 103
63+
20 1 19.9616 20.5958 20.7978 0 1 1 102
64+
20 2 18.8315 20.7801 20.8927 0 1 1 103
65+
21 0 6.72665 18.7653 23.0635 0 1 1 103
66+
21 1 6.5011 18.5677 24.1727 0 1 1 102
67+
21 2 6.27555 18.37 25.2818 0 1 1 103
68+
22 0 22.8438 18.3481 18.1845 0 1 1 103
69+
22 1 22.0516 19.1233 17.8818 0 1 1 102
70+
22 2 21.2595 19.8985 17.5791 0 1 1 103
71+
23 0 20.4517 8.71243 8.04973 0 1 1 103
72+
23 1 20.1702 7.61064 8.21394 0 1 1 102
73+
23 2 19.8886 6.50884 8.37816 0 1 1 103
74+
24 0 18.2347 4.41087 15.0252 0 1 1 103
75+
24 1 17.8855 5.46338 14.7244 0 1 1 102
76+
24 2 17.5363 6.51588 14.4235 0 1 1 103
77+
25 0 18.9661 11.2445 18.5384 0 1 1 103
78+
25 1 18.9988 12.3917 18.4833 0 1 1 102
79+
25 2 19.0315 13.539 18.4283 0 1 1 103
80+
26 0 18.8092 18.5098 10.8272 0 1 1 103
81+
26 1 18.4707 18.349 11.9134 0 1 1 102
82+
26 2 18.1323 18.1882 12.9996 0 1 1 103
83+
27 0 16.1088 15.7243 8.41945 0 1 1 103
84+
27 1 16.4206 15.79 7.31554 0 1 1 102
85+
27 2 16.7325 15.8557 6.21162 0 1 1 103
86+
28 0 24.0083 6.36572 18.2795 0 1 1 103
87+
28 1 25.1572 6.36961 18.2586 0 1 1 102
88+
28 2 26.306 6.37349 18.2377 0 1 1 103
89+
29 0 18.3728 6.4692 10.8598 0 1 1 103
90+
29 1 17.4627 6.29632 10.18 0 1 1 102
91+
29 2 16.5526 6.12344 9.50026 0 1 1 103
92+
30 0 6.90994 8.76926 19.0777 0 1 1 103
93+
30 1 7.2459 8.52484 18.0064 0 1 1 102
94+
30 2 7.58186 8.28042 16.9352 0 1 1 103
95+
31 0 5.90922 6.44304 2.01455 0 1 1 103
96+
31 1 6.74961 6.55097 2.79062 0 1 1 102
97+
31 2 7.59001 6.65889 3.56669 0 1 1 103
98+
32 0 7.36951 5.5023 10.1587 0 1 1 103
99+
32 1 8.20612 5.78228 9.42252 0 1 1 102
100+
32 2 9.04273 6.06225 8.68638 0 1 1 103
101+
33 0 6.27569 16.0264 16.1254 0 1 1 103
102+
33 1 6.87665 16.9903 15.9529 0 1 1 102
103+
33 2 7.47761 17.9543 15.7804 0 1 1 103
104+
34 0 3.73858 19.2694 15.0331 0 1 1 103
105+
34 1 4.39178 19.7833 15.8265 0 1 1 102
106+
34 2 5.04499 20.2972 16.6199 0 1 1 103
107+
35 0 18.4174 16.2909 15.3199 0 1 1 103
108+
35 1 19.5444 16.1816 15.5152 0 1 1 102
109+
35 2 20.6714 16.0724 15.7104 0 1 1 103
110+
36 0 21.0739 15.904 3.30039 0 1 1 103
111+
36 1 21.1018 17.0527 3.30349 0 1 1 102
112+
36 2 21.1297 18.2013 3.3066 0 1 1 103
113+
37 0 9.43522 17.5235 4.91916 0 1 1 103
114+
37 1 9.82165 18.2852 5.68771 0 1 1 102
115+
37 2 10.2081 19.0469 6.45626 0 1 1 103
116+
38 0 19.9039 20.9397 6.54086 0 1 1 103
117+
38 1 19.1429 21.7102 6.15677 0 1 1 102
118+
38 2 18.382 22.4807 5.77268 0 1 1 103
119+
39 0 18.3867 2.91488 20.4827 0 1 1 103
120+
39 1 19.3746 2.90576 19.8961 0 1 1 102
121+
39 2 20.3625 2.89663 19.3094 0 1 1 103
122+
40 0 15.9731 21.2234 15.8406 0 1 1 103
123+
40 1 16.2573 20.151 16.1396 0 1 1 102
124+
40 2 16.5415 19.0786 16.4385 0 1 1 103
125+
41 0 16.8367 20.9405 9.02075 0 1 1 103
126+
41 1 16.9129 19.8211 8.77318 0 1 1 102
127+
41 2 16.9891 18.7017 8.5256 0 1 1 103
128+
42 0 18.1714 20.1798 2.44985 0 1 1 103
129+
42 1 18.0338 19.394 1.62299 0 1 1 102
130+
42 2 17.8962 18.6081 0.796121 0 1 1 103
131+
43 0 6.63688 20.2147 4.96478 0 1 1 103
132+
43 1 7.50101 20.5993 4.31241 0 1 1 102
133+
43 2 8.36514 20.9838 3.66003 0 1 1 103

BLOCKPOCKET_COMPARISON.md renamed to Examples/BlockPocket/BLOCKPOCKET_COMPARISON.md

File renamed without changes.

Examples/BlockPocket/CO2.def

Lines changed: 23 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,23 @@
1+
# critical constants: Temperature [T], Pressure [Pa], and Acentric factor [-]
2+
304.1282
3+
7377300.0
4+
0.22394
5+
#Number Of Atoms
6+
3
7+
# Number of groups
8+
1
9+
# CO2-group
10+
rigid
11+
# number of atoms
12+
3
13+
# atomic positions
14+
0 O_co2 0.0 0.0 1.149
15+
1 C_co2 0.0 0.0 0.0
16+
2 O_co2 0.0 0.0 -1.149
17+
# Chiral centers Bond BondDipoles Bend UrayBradley InvBend Torsion Imp. Torsion Bond/Bond Stretch/Bend Bend/Bend Stretch/Torsion Bend/Torsion IntraVDW IntraCoulomb
18+
0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
19+
# Bond stretch: atom n1-n2, type, parameters
20+
0 1 RIGID_BOND
21+
1 2 RIGID_BOND
22+
# Number of config moves
23+
0
Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1 @@
1+
PosA PosB TypeA TypeB E

Examples/BlockPocket/LTA.block

Lines changed: 32 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,32 @@
1+
31
2+
0.008414 0.618798 23.109619 3.075180
3+
23.466280 23.357084 0.909701 2.348650
4+
0.443309 0.391223 1.785033 2.820690
5+
12.076787 23.838117 24.031168 3.338710
6+
13.766957 1.415502 1.494879 1.533470
7+
1.281422 13.114997 0.634123 2.616260
8+
23.455599 12.373338 23.750799 3.008210
9+
1.422235 10.811959 23.224414 1.685560
10+
0.705058 10.576501 0.948491 2.209180
11+
11.966609 12.804696 1.184020 3.024230
12+
13.109816 11.503747 23.190528 2.399070
13+
10.702886 10.859891 23.345421 1.748890
14+
10.852107 13.621346 22.989201 1.637860
15+
13.867043 13.840303 23.403763 1.659840
16+
24.127326 1.985795 12.658495 2.741330
17+
22.632589 24.215331 12.587777 2.840870
18+
1.503117 23.851941 12.712394 2.753640
19+
24.453391 0.253882 10.262394 3.022960
20+
11.446976 0.139298 13.251892 3.129680
21+
13.868197 0.994743 11.414883 2.156770
22+
13.636742 23.289190 10.979768 1.927660
23+
12.225419 0.004085 10.058293 1.452530
24+
23.049189 13.707731 11.564030 2.146960
25+
1.360011 12.847274 10.883955 2.289790
26+
24.289831 12.442583 14.343926 2.984880
27+
24.340242 10.758528 11.061807 2.543800
28+
11.213507 12.689189 11.913276 3.132000
29+
13.577933 11.058295 13.290025 2.156590
30+
13.743581 10.938565 10.794206 1.662600
31+
13.790211 13.499209 13.725410 1.684000
32+
13.877602 13.826208 10.693211 1.200000

0 commit comments

Comments
 (0)