|
| 1 | +from snakefmt.formatter import TAB |
| 2 | +from tests import setup_formatter |
| 3 | + |
| 4 | + |
| 5 | +class TestSnakemakeV8V9Features: |
| 6 | + def test_global_conda_directive(self): |
| 7 | + """Test for issue #209: Global conda directive""" |
| 8 | + setup_formatter('conda: "envs/global.yaml"') |
| 9 | + setup_formatter('conda:\n "envs/global.yaml"') |
| 10 | + |
| 11 | + def test_module_directive(self): |
| 12 | + snake = ( |
| 13 | + "module other:\n" |
| 14 | + f'{TAB}snakefile: "other.smk"\n' |
| 15 | + f"{TAB}config: config\n" |
| 16 | + f'{TAB}meta_wrapper: "meta"\n' |
| 17 | + ) |
| 18 | + setup_formatter(snake) |
| 19 | + |
| 20 | + def test_use_rule_with_block(self): |
| 21 | + snake = ( |
| 22 | + "use rule * from other as other_* with:\n" |
| 23 | + f'{TAB}conda: "envs/other.yaml"\n' |
| 24 | + f"{TAB}threads: 4\n" |
| 25 | + f"{TAB}resources:\n" |
| 26 | + f"{TAB}{TAB}mem_mb=1000\n" |
| 27 | + ) |
| 28 | + setup_formatter(snake) |
| 29 | + |
| 30 | + def test_storage_directive(self): |
| 31 | + snake = "storage:\n" f'{TAB}provider="s3",\n' f"{TAB}retries=3\n" |
| 32 | + setup_formatter(snake) |
| 33 | + |
| 34 | + def test_resource_scopes_directive(self): |
| 35 | + snake = "resource_scopes:\n" f'{TAB}mem_mb="global"\n' |
| 36 | + setup_formatter(snake) |
| 37 | + |
| 38 | + def test_new_rule_properties(self): |
| 39 | + snake = ( |
| 40 | + "rule a:\n" |
| 41 | + f'{TAB}output: "a"\n' |
| 42 | + f"{TAB}retries: 3\n" |
| 43 | + f"{TAB}handover: True\n" |
| 44 | + f"{TAB}default_target: True\n" |
| 45 | + f"{TAB}localrule: True\n" |
| 46 | + f"{TAB}cache: True\n" |
| 47 | + ) |
| 48 | + setup_formatter(snake) |
| 49 | + |
| 50 | + def test_input_output_flags(self): |
| 51 | + # inputflags and outputflags take no key parameters (NoKeyParamList) |
| 52 | + snake = "inputflags:\n" f'{TAB}"flag1", "flag2"\n' |
| 53 | + setup_formatter(snake) |
| 54 | + |
| 55 | + def test_pathvars_directive(self): |
| 56 | + # pathvars is in SnakeGlobal |
| 57 | + snake = "pathvars:\n" f'{TAB}var1="path/to/1"\n' |
| 58 | + setup_formatter(snake) |
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