Circe/setup.py at main · shahrozeabbas/Circe · GitHub

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"""
Circe: Predict cis-Regulatory DNA Interactions from Single-Cell ATAC-seq Data

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Cython extension build configuration for circe.pyquic
"""
from setuptools import setup, Extension
from setuptools.command.build_ext import build_ext
import numpy
import platform
from Cython.Build import cythonize


class BuildExt(build_ext):
    def build_extensions(self):
        for ext in self.extensions:
            if platform.system() == 'Darwin':
                ext.extra_compile_args = ['-I/System/Library/Frameworks/vecLib.framework/Headers']
                if 'ppc' in platform.machine():
                    ext.extra_compile_args.append('-faltivec')
                ext.extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
            else:
                ext.include_dirs.append('/usr/local/include')
                ext.extra_compile_args += ['-msse2', '-O2', '-fPIC', '-w']
                ext.extra_link_args += ['-llapack']
        build_ext.build_extensions(self)


extensions = [
    Extension(
        'circe.pyquic',
        sources=['pyquic_ext/QUIC.C', 'pyquic_ext/pyquic.pyx'],
        include_dirs=[numpy.get_include(), 'pyquic_ext'],
        libraries=['lapack', 'blas'],
        language='c++',
    ),
]

setup(
    ext_modules=cythonize(extensions, language_level=3),
    cmdclass={'build_ext': BuildExt},
)