gromacs-bioid/docker-compose.yml at main · sb-ncbr/gromacs-bioid · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
name: bioid

services:
  redis:
    image: redis:6-alpine
    restart: unless-stopped
    ports:
      - "6379:6379"

  api:
    build:
      context: .
      dockerfile: Dockerfile.api
    # image: cerit.io/ceitec-biodata-pub/gromacs-metadump-api:latest
    restart: unless-stopped
    user: "1000:1000"
    environment:
      - CELERY_BROKER_URL=redis://redis:6379/0
      - CELERY_RESULT_BACKEND=redis://redis:6379/0
      - DATA_FOLDER=/app/data
      - CLEANUP_DAYS=30
      - PREFERRED_URL_SCHEME="http"
      - TZ=Europe/Prague
      - DATABASE_URI=postgresql://postgres:postgres@postgres:5432/gmxmetadump
    ports:
      - "5000:5000"
    volumes:
      - annotation_data:/app/data
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.api.rule=Host(`localhost`) && PathPrefix(`/api`)"
      - "traefik.http.routers.api.entrypoints=web"
    depends_on:
      - traefik
      - redis
      - postgres
      - worker

  worker:
    build:
      context: .
      dockerfile: Dockerfile.worker
    # image: cerit.io/ceitec-biodata-pub/gromacs-metadump-worker:latest
    restart: unless-stopped
    user: "1000:1000"
    environment:
      - CELERY_BROKER_URL=redis://redis:6379/0
      - CELERY_RESULT_BACKEND=redis://redis:6379/0
      - DATA_FOLDER=/app/data
      - CLEANUP_DAYS=30
      - PREFERRED_URL_SCHEME="http"
      - TZ=Europe/Prague
      - DATABASE_URI=postgresql://postgres:postgres@postgres:5432/gmxmetadump
    volumes:
      - annotation_data:/app/data
    labels:
      - "traefik.enable=false"
    depends_on:
      - redis
      - postgres

  web:
    build:
      context: .
      dockerfile: Dockerfile.web
      target: dev
    restart: unless-stopped
    command: npm run dev
    working_dir: /usr/src/app
    ports:
      - "8081:8081"
    depends_on:
      - traefik
      - api
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.web.rule=Host(`localhost`)"
      - "traefik.http.routers.web.entrypoints=web"
      - "traefik.http.services.web.loadbalancer.server.port=8081"
    develop:
      watch:
        - path: ./web
          action: sync
          target: /usr/src/app
          ignore:
            - node_modules
            - .git
            - .vscode
            - .idea
            - dist
        - path: ./web/package.json
          action: rebuild

  traefik:
    image: traefik:v2.10
    restart: unless-stopped
    command:
      - "--api.insecure=true"
      - "--providers.docker=true"
      - "--entrypoints.web.address=:80"
    ports:
      - "80:80"
    volumes:
      - /var/run/docker.sock:/var/run/docker.sock

  postgres:
    image: postgres:15-alpine
    restart: unless-stopped
    environment:
      - POSTGRES_USER=postgres
      - POSTGRES_PASSWORD=postgres
      - POSTGRES_DB=gmxmetadump
    volumes:
      - database_data:/var/lib/postgresql/data
    ports:
      - "5432:5432"

  adminer:
    image: adminer:5.3.0
    restart: unless-stopped
    ports:
      - "8080:8080"
    environment:
      - ADMINER_DEFAULT_SERVER=postgres
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.traefik.rule=Host(`localhost`) && PathPrefix(`/adminer`)"
      - "traefik.http.routers.traefik.entrypoints=web"
    depends_on:
      - postgres

volumes:
  annotation_data:
  database_data: