test multiple os

Author: rvalavi

.github/workflows/R-CMD-check.yml

@@ -8,7 +8,16 @@ name: R-CMD-check
 
 jobs:
   R-CMD-check:
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.config.os }}
+    
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+    
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: ubuntu-latest, r: 'release'}
+          - {os: windows-latest, r: 'release'}
 
     env:
       GITHUB_PAT: ${{ secrets.BLOCKCV_TOKEN }}
@@ -19,10 +28,13 @@ jobs:
 
       - name: Setting up pandoc for Rmd docs
         uses: r-lib/actions/setup-pandoc@v2
+        
       - uses: r-lib/actions/setup-tinytex@v2
+        if: runner.os != 'Windows'
 
       - uses: r-lib/actions/setup-r@v2
         with:
+          r-version: ${{ matrix.config.r }}
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
@@ -34,11 +46,12 @@ jobs:
         uses: r-lib/actions/check-r-package@v2
 
       - name: Test coverage
+        if: matrix.config.os == 'ubuntu-latest'
         run: |
           covr::codecov(
             quiet = FALSE,
             function_exclusions = c("rangeExplorer", "foldExplorer", "cv_block_size")
           )
         shell: Rscript {0}
         env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

R/cv_similarity.R

@@ -30,13 +30,13 @@
 #' experimental.
 #'
 #' @inheritParams cv_plot
-#' @param x a simple features (sf) or SpatialPoints object of the spatial sample data used for creating
+#' @param x a simple features (sf) object of the spatial sample points used for creating
 #' the \code{cv} object.
 #' @param r a terra SpatRaster object of environmental predictor that are going to be used for modelling. This
 #' is used to calculate similarity between the training and testing points.
 #' @param method the similarity method including: MESS, L1 and L2. Read the details section.
 #' @param num_sample number of random samples from raster to calculate similarity distances (only for L1 and L2).
-#' @param num_plot a vector of indices of folds.
+#' @param num_plot a vector of indices of folds for plotting (default uses all).
 #' @param jitter_width numeric; the width of jitter points.
 #' @param points_size numeric; the size of points.
 #' @param points_alpha numeric; the opacity of points
@@ -72,7 +72,7 @@
 #'                  iteration = 1)
 #'
 #' # compute extrapolation
-#' cv_similarity(cv = sb, r = covars, x = pa_data)
+#' cv_similarity(cv = sb, r = covars, x = pa_data, method = "MESS")
 #'
 #' }
 cv_similarity <- function(