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Copy pathphg_with_tomos.rec
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109 lines (87 loc) · 4.1 KB
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###############################################################################
# PARAMETER FILE FOR THE PHG SIMULATION
# to be used with run_SimSET.sh
# It uses the following strings which will be replaced by run_SimSET.sh:
# SIMSET_DIRECTORY, INPUT_DIRECTORY, OUTPUT_DIRECTORY, BIN.REC, DET.REC, PHOTONS
#
# This particular file is created for the Siemens HR+ scanner.
#
# Author: Pablo Aguiar - University of Barcelona (Nov 2004)
# Updated and added to the archive by Charalampos Tsoumpas
#
#
###############################################################################
# RUNTIME OPTIONS
BOOL simulate_stratification = true
BOOL simulate_forced_detection = true
BOOL forced_non_absorbtion = true
REAL acceptance_angle = 90.0
INT num_to_simulate = PHOTONS
BOOL simulate_SPECT = false
BOOL simulate_PET_coincidences_only = true
BOOL simulate_PET_coincidences_plus_singles = false
BOOL adjust_for_positron_range = false
#REAL length_of_scan = 70
BOOL adjust_for_collinearity = false
REAL minimum_energy = 276
REAL photon_energy = 511.0
REAL weight_window_ratio = 1.0
BOOL point_source_voxels = false
INT random_seed = 0
BOOL model_coherent_scatter = false
ENUM isotope = f18
# TARGET CYLINDER INFORMATION
# HR+ length is 15.52 with 32 rings
# Currently, z_Min has to start at -(ring_spacing)/2
NUM_ELEMENTS_IN_LIST target_cylinder = 3
REAL target_zMin = -7.684508
REAL target_zMax = 7.684508
REAL radius = 60
# COHERENT ANGULAR DISTRIBUTION FILES
STR coherent_scatter_table = "SIMSET_DIRECTORY/phg.data/coh.tables"
# ACTIVITY INDEX FILE
STR activity_indexes = "OUTPUT_DIRECTORY/rec.act_indexes"
# ACTIVITY TABLE FILE
STR activity_table = "SIMSET_DIRECTORY/phg.data/phg_act_table"
# ACTIVITY INDEX TO TABLE TRANSLATION FILE
STR activity_index_trans = "SIMSET_DIRECTORY/phg.data/phg_act_index_trans"
# ACTIVITY IMAGE OUTPUT FILE
STR activity_image = "OUTPUT_DIRECTORY/rec.activity_image"
# ATTENUATION INDEX FILE
STR attenuation_indexes = "OUTPUT_DIRECTORY/rec.att_indexes"
# ATTENUATION TABLE FILE
STR attenuation_table = "SIMSET_DIRECTORY/phg.data/phg_att_table"
# ATTENUATION INDEX TO TABLE TRANSLATION FILE
STR attenuation_index_trans = "SIMSET_DIRECTORY/phg.data/phg_att_index_trans"
# ATTENUATION IMAGE OUTPUT FILE
STR attenuation_image = "OUTPUT_DIRECTORY/rec.attenuation_image"
# PRODUCTIVITY INPUT TABLE FILE
#STR productivity_input_table = "OUTPUT_DIRECTORY/sampling_rec"
STR productivity_input_table = ""
# PRODUCTIVITY TABLE FILE
#STR productivity_output_table = "OUTPUT_DIRECTORY/sampling_rec"
STR productivity_output_table = ""
# FORCED DETECTION TABLE FILE
STR forced_detection_table = ""
STR statistics_file = "OUTPUT_DIRECTORY/rec.stat"
# ISOTOPE DATA FILE
STR isotope_data_file = "SIMSET_DIRECTORY/phg.data/isotope_positron_energy_data"
#COLLIMATOR PARAMETER FILE
#STR collimator_params_file = "OUTPUT_DIRECTORY/col.rec"
#STR collimator_params_file = ""
# DETECTOR PARAMETER FILE
#STR detector_params_file = "OUTPUT_DIRECTORY/DET.REC"
# BINNING PARAMETER FILE
#STR bin_params_file = "OUTPUT_DIRECTORY/BIN.REC"
#STR bin_params_file = "OUTPUT_DIRECTORY/bin_2.rec"
# HISTORY FILE
STR history_file = ""
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min360.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min380.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min400.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min420.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min440.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min460.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min480.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min500.tomo"
STR tomograph_params_file = "/home/treeves/devel/build/sources/STIR/src/SimSET/examples/tomo_min520.tomo"