wastewater-guidance/mkdocs.yml at main · pha4ge/wastewater-guidance · GitHub

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site_url: https://pha4ge.github.io/wastewater-guidance/
site_name: "PHA4GE Wastewater Surveillance Guidance"
site_description: "Open-access methods, case studies, and best practices for wastewater and environmental surveillance"
site_author: "PHA4GE Wastewater Surveillance Working Group"
repo_url: https://github.com/pha4ge/wastewater-guidance
docs_dir: guidance_docs
edit_uri: edit/main/guidance_docs/
use_directory_urls: false

theme:
  name: material
  logo: images/phage-logo-thin.png
  home_url: /
  palette:
    - scheme: default
      primary: indigo
      accent: teal
    - scheme: slate
      primary: indigo
      accent: teal
  features:
    - navigation.instant
    - navigation.tabs
    - navigation.top
    - search.highlight
    - search.suggest
    - toc.integrate

markdown_extensions:
  - toc:
      permalink: true
  - tables
  - admonition
  - footnotes
  - def_list
  - attr_list
  - md_in_html
  - pymdownx.superfences
  - pymdownx.details
  - pymdownx.emoji:
      emoji_index: !!python/name:materialx.emoji.twemoji
      emoji_generator: !!python/name:materialx.emoji.to_svg
  - pymdownx.magiclink

plugins:
  - search

nav:
  - Home: index.md
  - Guidance:
      - Surveillance Strategies: SurveillanceStrategies-GuidanceDoc.md
      - Data Analysis: DataAnalysis-GuidanceDoc.md
      - Data Sharing: DataSharing-GuidanceDoc.md
      - Ethics & Legality: EthicsAndLegality-GuidanceDoc.md
  - Case Studies:
      - San Diego SARS-CoV-2: CaseStudy1-GuidanceDoc.md
      - Blantyre Typhoid: CaseStudy2-GuidanceDoc.md
      - Spain Mpox: CaseStudy3-GuidanceDoc.md
      - Bengaluru Multi-pathogen: CaseStudy4-GuidanceDoc.md