ruff format

Author: khoroshevskyi

peppy/eido/cli.py

@@ -148,9 +148,7 @@ def convert(
         None,
         "-a",
         "--args",
-        help=(
-            "Provide arguments to the filter function " "(e.g. arg1=val1 arg2=val2)."
-        ),
+        help=("Provide arguments to the filter function (e.g. arg1=val1 arg2=val2)."),
     ),
     list_filters: bool = typer.Option(
         False,

peppy/project.py

@@ -443,10 +443,10 @@ def parse_config_file(
             )  # due to some problems with symlinks in Nextflow
         config = load_yaml(cfg_path)
 
-        assert isinstance(
-            config, Mapping
-        ), "Config file parse did not yield a Mapping; got {} ({})".format(
-            config, type(config)
+        assert isinstance(config, Mapping), (
+            "Config file parse did not yield a Mapping; got {} ({})".format(
+                config, type(config)
+            )
         )
 
         _LOGGER.debug(f"Raw ({cfg_path}) config data: {config}")
@@ -470,7 +470,7 @@ def parse_config_file(
                     self.parse_config_file(cfg_path=i)
                 else:
                     _LOGGER.warning(
-                        "External Project configuration does not" " exist: {}".format(i)
+                        "External Project configuration does not exist: {}".format(i)
                     )
 
         self[CONFIG_KEY].update(**config)
@@ -815,8 +815,9 @@ def attr_merge(self):
                         "Subannotation requires column '{}'.".format(sample_colname)
                     )
                 _LOGGER.debug(
-                    "Using '{}' as sample name column from "
-                    "subannotation table".format(sample_colname)
+                    "Using '{}' as sample name column from subannotation table".format(
+                        sample_colname
+                    )
                 )
                 sample_indexer = (
                     subsample_table[sample_colname] == sample[self.st_index]

peppy/utils.py

@@ -126,7 +126,7 @@ def make_list(arg: list | str, obj_class: type) -> list:
 
     def _raise_faulty_arg():
         raise TypeError(
-            "Provided argument has to be a List[{o}] or a {o}, " "got '{a}'".format(
+            "Provided argument has to be a List[{o}] or a {o}, got '{a}'".format(
                 o=obj_class.__name__, a=arg.__class__.__name__
             )
         )