update command #90
Workflow file for this run
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| name: Upload Release Tarball and Container | |
| on: | |
| push: | |
| tags: | |
| - '*' # Push events of any tag created | |
| jobs: | |
| build_versioned_containers: | |
| name: Build/Push container | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| strategy: | |
| matrix: | |
| env: [align, assembly, deconvolution, demultiplex, metassembly, phase, qc, report, simulations, stitch, variants] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install Harpy | |
| uses: prefix-dev/setup-pixi@v0.9.4 | |
| with: | |
| pixi-version: v0.62.0 | |
| cache: false | |
| activate-environment: true | |
| - name: Clear space | |
| run: rm -rf /opt/hostedtoolcache | |
| # - name: Clear Space | |
| # uses: jlumbroso/free-disk-space@main | |
| - name: Recreate containers | |
| run: harpy containerize ${{ matrix.env }} | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v6 | |
| with: | |
| context: container/${{ matrix.env }} | |
| push: true | |
| tags: pdimens/harpy:$${{ matrix.env }}_{{ github.ref_name }} | |
| build_tarball: | |
| needs: build_versioned_containers | |
| name: Upload Release Tarball | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| repository-projects: write | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Build project | |
| # This builds the release tarball, stripped of unneccessary things | |
| run: | | |
| mkdir artifacts | |
| tar --exclude="test" --exclude=".deprecated" --exclude="resources" --exclude="artifacts" --exclude=".git" --exclude=".github" -zcvf artifacts/harpy.${{ github.ref_name }}.tar.gz . | |
| - name: Create Release with Assets | |
| uses: softprops/action-gh-release@v2 | |
| with: | |
| files: ./artifacts/harpy.${{ github.ref_name }}.tar.gz |