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    103 repositories

    • Dell-AI-AKL-Feb-2026

      Public
      Dell AI Workshop AKL
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•1•0•0•Updated Feb 18, 2026Feb 18, 2026

    • jupyter-rsession-proxy

      Public
      Jupyter extensions for running an RStudio rsession proxy
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •85•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • vg-srf

      Public
      Singularity recipe files for vg (https://github.com/vgteam/vg)
      Roff
      •0•1•0•0•Updated Nov 11, 2025Nov 11, 2025

    • cactus-srf

      Public
      Singularity recipe files for cactus (https://github.com/ComparativeGenomicsToolkit/cactus)
      Roff
      •0•0•0•0•Updated Aug 27, 2025Aug 27, 2025

    • repet-srf

      Public
      Singularity recipe files for REPET (https://urgi.versailles.inra.fr/Tools/REPET)
      Roff
      •1•0•0•0•Updated Aug 19, 2025Aug 19, 2025

    • rnahybrid-srf

      Public
      Apptainer recipe for RNAhybrid
      Roff
      •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

    • chromadb-chart

      Public
      Chart for deploying ChromaDB in Kubernetes
      Smarty
      •
      MIT License
      •29•0•0•0•Updated May 23, 2025May 23, 2025

    • mirdeep-p2_pipeline-srf

      Public
      Singularity recipe files for miRDeep-P2_pipeline (https://github.com/TF-Chan-Lab/miRDeep-P2_pipeline)
      0•0•1•0•Updated May 13, 2025May 13, 2025

    • busco-srf

      Public
      Singularity recipe files for busco (https://gitlab.com/ezlab/busco)
      Roff
      •1•0•0•0•Updated May 1, 2025May 1, 2025

    • qiime2-srf

      Public
      Singularity recipe files for QIIME 2 (https://docs.qiime2.org/)
      Roff
      •0•0•0•0•Updated Feb 23, 2025Feb 23, 2025

    • taxprofiler

      Public
      Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
      Nextflow
      •
      MIT License
      •64•0•0•0•Updated Sep 29, 2024Sep 29, 2024

    • GraffiTE

      Public
      GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read s…
      R
      •
      Other
      •15•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • angsd-srf

      Public
      Singularity recipe files for angsd (https://github.com/ANGSD/angsd)
      0•1•0•0•Updated Oct 24, 2023Oct 24, 2023

    • apsimx-srf

      Public
      Singularity recipe files for ApsimX (https://github.com/APSIMInitiative/ApsimX)
      4•3•0•0•Updated Oct 8, 2023Oct 8, 2023

    • easybuild-easyconfigs

      Public
      A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
      Python
      •
      GNU General Public License v2.0
      •782•0•0•0•Updated Aug 31, 2023Aug 31, 2023

    • gemoma-srf

      Public
      Apptainer recipe files for GeMoMa (http://www.jstacs.de/index.php/GeMoMa)
      Roff
      •0•0•0•0•Updated Aug 25, 2023Aug 25, 2023

    • masurca-srf

      Public
      Singularity recipe files for masurca (https://github.com/alekseyzimin/masurca)
      1•0•0•0•Updated Apr 19, 2023Apr 19, 2023

    • README

      Public
      Guidelines and license terms for Singularity Recipe Files repositories in this GitHub organization
      Shell
      •
      MIT License
      •0•3•0•0•Updated Mar 16, 2023Mar 16, 2023

    • guppy-srf

      Public
      Singularity recipe files for guppy (https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revm_14dec2018)
      Roff
      •1•0•1•0•Updated Mar 14, 2023Mar 14, 2023

    • multiqc-srf

      Public
      Singularity recipe files for multiqc (https://github.com/ewels/MultiQC)
      Roff
      •1•0•0•0•Updated Mar 7, 2023Mar 7, 2023

    • rstudio-docker-products

      Public
      Docker images for RStudio Professional Products
      Just
      •
      MIT License
      •56•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • pggb-srf

      Public
      Singularity recipe files for pggb (https://github.com/pangenome/pggb)
      Roff
      •0•0•0•0•Updated Feb 26, 2023Feb 26, 2023

    • gromacs-srf

      Public
      Singularity recipe files for GROMACS (http://www.gromacs.org/)
      Roff
      •0•1•0•0•Updated Feb 1, 2023Feb 1, 2023

    • fastqpuri-srf

      Public
      Singularity recipe files for FastqPuri (https://github.com/jengelmann/FastqPuri)
      0•0•0•0•Updated Jan 23, 2023Jan 23, 2023

    • sortmerna-srf

      Public
      Singularity recipe files for sortmerna (https://github.com/biocore/sortmerna)
      Roff
      •0•0•0•0•Updated Jan 17, 2023Jan 17, 2023

    • dvc-srf

      Public
      Singularity recipe files for dvc (https://github.com/iterative/dvc)
      Roff
      •3•0•0•0•Updated Jan 9, 2023Jan 9, 2023

    • imagemagick-srf

      Public
      Singularity recipe files for ImageMagick (imagemagick.org)
      0•0•0•0•Updated Nov 23, 2022Nov 23, 2022

    • 3d-dna-srf

      Public
      Singularity recipe files for 3D DNA (https://github.com/theaidenlab/3d-dna)
      0•0•0•0•Updated Nov 23, 2022Nov 23, 2022

    • gatk-srf

      Public
      Singularity recipe files for gatk (https://github.com/broadinstitute/gatk)
      Roff
      •0•0•0•0•Updated Aug 4, 2022Aug 4, 2022

    • mzmine3-srf

      Public
      Singularity recipe files for mzmine3 (https://github.com/mzmine/mzmine3)
      0•0•0•0•Updated Aug 3, 2022Aug 3, 2022
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