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    • Dell AI Workshop AKL
      Jupyter Notebook
      GNU General Public License v3.0
      3100Updated Feb 18, 2026Feb 18, 2026
    • Jupyter extensions for running an RStudio rsession proxy
      Python
      BSD 3-Clause "New" or "Revised" License
      85000Updated Jan 19, 2026Jan 19, 2026
    • vg-srf

      Public
      Singularity recipe files for vg (https://github.com/vgteam/vg)
      Roff
      0100Updated Nov 11, 2025Nov 11, 2025
    • Singularity recipe files for cactus (https://github.com/ComparativeGenomicsToolkit/cactus)
      Roff
      0000Updated Aug 27, 2025Aug 27, 2025
    • repet-srf

      Public
      Singularity recipe files for REPET (https://urgi.versailles.inra.fr/Tools/REPET)
      Roff
      1000Updated Aug 19, 2025Aug 19, 2025
    • Apptainer recipe for RNAhybrid
      Roff
      0000Updated Aug 5, 2025Aug 5, 2025
    • Chart for deploying ChromaDB in Kubernetes
      Smarty
      MIT License
      29000Updated May 23, 2025May 23, 2025
    • Singularity recipe files for miRDeep-P2_pipeline (https://github.com/TF-Chan-Lab/miRDeep-P2_pipeline)
      0010Updated May 13, 2025May 13, 2025
    • busco-srf

      Public
      Singularity recipe files for busco (https://gitlab.com/ezlab/busco)
      Roff
      1000Updated May 1, 2025May 1, 2025
    • Singularity recipe files for QIIME 2 (https://docs.qiime2.org/)
      Roff
      0000Updated Feb 23, 2025Feb 23, 2025
    • Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
      Nextflow
      MIT License
      64000Updated Sep 29, 2024Sep 29, 2024
    • GraffiTE

      Public
      GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read s…
      R
      Other
      15000Updated Jul 12, 2024Jul 12, 2024
    • angsd-srf

      Public
      Singularity recipe files for angsd (https://github.com/ANGSD/angsd)
      0100Updated Oct 24, 2023Oct 24, 2023
    • Singularity recipe files for ApsimX (https://github.com/APSIMInitiative/ApsimX)
      4300Updated Oct 8, 2023Oct 8, 2023
    • A collection of easyconfig files that describe which software to build using which build options with EasyBuild.
      Python
      GNU General Public License v2.0
      782000Updated Aug 31, 2023Aug 31, 2023
    • Apptainer recipe files for GeMoMa (http://www.jstacs.de/index.php/GeMoMa)
      Roff
      0000Updated Aug 25, 2023Aug 25, 2023
    • Singularity recipe files for masurca (https://github.com/alekseyzimin/masurca)
      1000Updated Apr 19, 2023Apr 19, 2023
    • README

      Public
      Guidelines and license terms for Singularity Recipe Files repositories in this GitHub organization
      Shell
      MIT License
      0300Updated Mar 16, 2023Mar 16, 2023
    • guppy-srf

      Public
      Singularity recipe files for guppy (https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revm_14dec2018)
      Roff
      1010Updated Mar 14, 2023Mar 14, 2023
    • Singularity recipe files for multiqc (https://github.com/ewels/MultiQC)
      Roff
      1000Updated Mar 7, 2023Mar 7, 2023
    • Docker images for RStudio Professional Products
      Just
      MIT License
      56000Updated Mar 6, 2023Mar 6, 2023
    • pggb-srf

      Public
      Singularity recipe files for pggb (https://github.com/pangenome/pggb)
      Roff
      0000Updated Feb 26, 2023Feb 26, 2023
    • Singularity recipe files for GROMACS (http://www.gromacs.org/)
      Roff
      0100Updated Feb 1, 2023Feb 1, 2023
    • Singularity recipe files for FastqPuri (https://github.com/jengelmann/FastqPuri)
      0000Updated Jan 23, 2023Jan 23, 2023
    • Singularity recipe files for sortmerna (https://github.com/biocore/sortmerna)
      Roff
      0000Updated Jan 17, 2023Jan 17, 2023
    • dvc-srf

      Public
      Singularity recipe files for dvc (https://github.com/iterative/dvc)
      Roff
      3000Updated Jan 9, 2023Jan 9, 2023
    • Singularity recipe files for ImageMagick (imagemagick.org)
      0000Updated Nov 23, 2022Nov 23, 2022
    • Singularity recipe files for 3D DNA (https://github.com/theaidenlab/3d-dna)
      0000Updated Nov 23, 2022Nov 23, 2022
    • gatk-srf

      Public
      Singularity recipe files for gatk (https://github.com/broadinstitute/gatk)
      Roff
      0000Updated Aug 4, 2022Aug 4, 2022
    • Singularity recipe files for mzmine3 (https://github.com/mzmine/mzmine3)
      0000Updated Aug 3, 2022Aug 3, 2022
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