Repositories list

• raw2ometiff

  Public
  Raw format to OME-TIFF converter

  Java

  •

  GNU General Public License v2.0

  •2424 forks•5656 stars•33 issues•22 pull requests•Updated Apr 8, 2026Apr 8, 2026

• bioformats2raw

  Public
  Bio-Formats image file format to raw format converter

  ome-zarr-converter

  ome-zarr-converter

  Java

  •

  GNU General Public License v2.0

  •3939 forks•104104 stars•2020 issues•11 pull request•Updated Apr 3, 2026Apr 3, 2026

• omero-ms-pixel-buffer

  Public
  OMERO pixel buffer Vert.x asynchronous microservice server

  Java

  •

  GNU General Public License v2.0

  •66 forks•11 star•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• omero-ms-image-region

  Public
  OMERO image region Vert.x asynchronous microservice server

  Java

  •

  GNU General Public License v2.0

  •1313 forks•11 star•44 issues•55 pull requests•Updated Mar 16, 2026Mar 16, 2026

• omero-ms-thumbnail

  Public
  OMERO thumbnail Vert.x asynchronous microservice server

  Java

  •

  GNU General Public License v2.0

  •99 forks•11 star•11 issue•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• omero-ms-core

  Public
  OMERO Vert.x microservice core

  Java

  •

  GNU General Public License v2.0

  •66 forks•11 star•00 issues•00 pull requests•Updated Mar 4, 2026Mar 4, 2026

• NGFF-Converter

  Public
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF

  Java

  •

  GNU General Public License v2.0

  •88 forks•3535 stars•99 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• libjpeg-turbo-java

  Public
  libjpeg-turbo Java build

  Java

  •33 forks•00 stars•11 issue•00 pull requests•Updated Feb 12, 2026Feb 12, 2026

• qupath-extension-omero-web

  Public
  QuPath extension to work with images through OMERO's web API

  Java

  •

  GNU General Public License v3.0

  •1111 forks•11 star•22 issues•11 pull request•Updated Jan 23, 2026Jan 23, 2026

• omero2pandas

  Public
  Exchange data between OMERO.tables and pandas DataFrames.

  pandasomeroomero-py

  pandasomeroomero-py

  Python

  •

  GNU General Public License v3.0

  •44 forks•55 stars•44 issues•11 pull request•Updated Jan 7, 2026Jan 7, 2026

• isyntax2raw

  Public
  iSyntax to raw format converter

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1919 forks•2424 stars•11 issue•22 pull requests•Updated Nov 26, 2025Nov 26, 2025

• omero-pc-steward

  Public
  OMERO Process Container Steward

  Java

  •

  GNU General Public License v2.0

  •33 forks•11 star•00 issues•00 pull requests•Updated Oct 29, 2025Oct 29, 2025

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •1010 forks•22 stars•55 issues•00 pull requests•Updated Oct 29, 2025Oct 29, 2025

• prokaryote

  Public
  CellProfiler’s Java dependencies

  Java

  •

  GNU General Public License v3.0

  •1111 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2025May 14, 2025

• ome-omero-roitool

  Public
  OME and OMERO ROI tool

  Java

  •

  GNU General Public License v2.0

  •77 forks•55 stars•00 issues•00 pull requests•Updated Apr 24, 2025Apr 24, 2025

• omero-user-token

  Public
  OMERO user token

  Python

  •

  GNU General Public License v2.0

  •55 forks•33 stars•22 issues•00 pull requests•Updated Feb 4, 2025Feb 4, 2025

• CellProfiler

  Public
  An open-source application for biological image analysis

  Python

  •

  Other

  •418418 forks•00 stars•00 issues•00 pull requests•Updated Dec 2, 2024Dec 2, 2024

• core

  Public
  Python

  •

  Other

  •2525 forks•00 stars•00 issues•00 pull requests•Updated Dec 2, 2024Dec 2, 2024

• python-bioformats

  Public
  Read and write life sciences file formats

  Python

  •

  Other

  •4848 forks•00 stars•00 issues•00 pull requests•Updated Nov 8, 2024Nov 8, 2024

• zarr2zarr

  Public
  Experimental Java library for converting Zarr v2 to v3. This is a proof of concept implemented as part of https://ome.github.io/ome2024-ngff-challenge/ and not …

  Java

  •

  GNU General Public License v2.0

  •44 forks•00 stars•11 issue•00 pull requests•Updated Sep 13, 2024Sep 13, 2024

• github-action-ssh

  Public
  🔐 Simple GitHub Action to run commands on a remote server using SSH.

  JavaScript

  •

  MIT License

  •8080 forks•00 stars•00 issues•00 pull requests•Updated Jul 4, 2024Jul 4, 2024

• zeroc-ice-py-linux-aarch64

  Public
  Builds ZeroC Ice Python manylinux_2_28 wheel packages for Linux aarch64.

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 20, 2024Jun 20, 2024

• zeroc-ice-ubuntu2404-x86_64

  Public
  Ubuntu 24.04 x86_64 ZeroC Ice Builder

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 19, 2024Jun 19, 2024

• zeroc-ice-py-macos-universal2

  Public
  Builds ZeroC Ice Python wheel packages for macOS universal2 (x86_64 + arm64)

  22 forks•00 stars•00 issues•00 pull requests•Updated Mar 25, 2024Mar 25, 2024

• zeroc-ice-py-win-x86_64

  Public
  Builds ZeroC Ice Python wheel packages for Windows (x86_64, Visual Studio 2019)

  11 fork•00 stars•00 issues•00 pull requests•Updated Mar 25, 2024Mar 25, 2024

• zeroc-ice-py-patches

  Public
  Patches for ZeroC Ice Python builds

  22 forks•00 stars•00 issues•00 pull requests•Updated Mar 25, 2024Mar 25, 2024

• jxrlib

  Public
  C

  •1010 forks•1010 stars•77 issues•22 pull requests•Updated Mar 15, 2024Mar 15, 2024

• zeroc-ice-py-linux-x86_64

  Public
  Builds ZeroC Ice Python manylinux_2_28 wheel packages for Linux x86_64.

  Dockerfile

  •22 forks•11 star•11 issue•00 pull requests•Updated Feb 2, 2024Feb 2, 2024

• omero-ldaptool

  Public
  Command line tool for working with OMERO and LDAP

  Java

  •

  GNU General Public License v2.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jan 15, 2024Jan 15, 2024

• zeroc-ice-rhel9-x86_64

  Public
  Builds ZeroC Ice packages for RHEL 9 x86_64.

  Dockerfile

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 30, 2023Nov 30, 2023