TIO-IKIM repositories

29 repositories

shape-mi-demographics
Public
How much can organ shape alone reveal? Using 1,228 whole-body CTs (16 organs, intensity discarded), we predict sex (AUC 0.87), age (MAE 9.3 yr), and show shape…
privacy mri xgboost
privacy mri xgboost point-clouds miccai computational-anatomy ct-imaging statistical-shape-analysis organ-segmentation totalsegmentator
Python
•
Other
•0•0•0•0•Updated Sep 14, 2026Sep 14, 2026
shape-demographics-capi
Public
What does female pelvic organ shape encode? Uterine corpus shape predicts age (R²=0.14, size-dominated, not fibroids). Ovarian/uterine shape detects endometriom…
xgboost miccai womens-health
xgboost miccai womens-health endometriosis statistical-shape-analysis uterus inter-rater-reliability pelvic-mri multi-site-confounding shape-descriptors
Python
•
Other
•0•0•0•0•Updated Sep 8, 2026Sep 8, 2026
STM
Public
Python
•
MIT License
•0•1•0•0•Updated Sep 2, 2026Sep 2, 2026
PhaseGen
Public
PhaseGen - Generate MRI raw data based on magnitudinal data
mri diffusion-models
mri diffusion-models
Python
•
Other
•2•13•0•0•Updated Jun 17, 2026Jun 17, 2026
kspace-breast-seg
Public
Hybrid k-space-to-image deep learning for breast cancer lesion segmentation directly from acquired MRI k-space.
Python
•
Apache License 2.0
•0•2•0•0•Updated May 21, 2026May 21, 2026
AIANO
Public
TypeScript
•
Apache License 2.0
•0•2•0•0•Updated May 7, 2026May 7, 2026
Learning-to-Look-Closer
Public
Python
•
Apache License 2.0
•2.5k•4•0•0•Updated Apr 1, 2026Apr 1, 2026
medical_image_deidentification
Public
De-Identification of Medical Imaging Data: A Comprehensive Tool for Ensuring Patient Privacy
Python
•
Other
•7•34•0•0•Updated Mar 31, 2026Mar 31, 2026
kViT
Public
Complex-valued Vision Transformer designed for efficient MRI classification directly from raw k-Space data using physics-informed radial patching
Python
•
Other
•1•4•0•0•Updated Jan 27, 2026Jan 27, 2026
AMD_SemSeg
Public
Other
•0•1•0•0•Updated Jan 15, 2026Jan 15, 2026
Spacewalker
Public
Traversing Representation Spaces for Fast Interactive Exploration and Annotation of Unstructured Data
python ai annotation
python ai annotation visualisation dimensionality-reduction vizualization
JavaScript
•
MIT License
•0•1•0•0•Updated Sep 3, 2025Sep 3, 2025
CellViT-Inference
Public
Python
•
Other
•6•16•7•0•Updated Aug 13, 2025Aug 13, 2025
CellViT-plus-plus
Public
Python
•
Other
•56•223•25•2•Updated Jul 23, 2025Jul 23, 2025
CellViT
Public
CellViT: Vision Transformers for Precise Cell Segmentation and Classification
python ai ml
python ai ml pytorch cell microscopy digitalpathology
Python
•
Other
•74•396•20•1•Updated Jul 23, 2025Jul 23, 2025
controlled-clinical-generation
Public
This repository accompanies the paper Towards Conditioning Clinical Text Generation for User Control, which explores methods for enhancing controllability in cl…
0•0•0•0•Updated May 28, 2025May 28, 2025
PathoPatcher
Public
PathoPatcher is a Python project designed for accelerating Whole Slide Image Preprocessing, employing AI-based preprocessing techniques with features like annot…
preprocessing digital-pathology pathology
preprocessing digital-pathology pathology wsi cpath wsi-images
Python
•
Other
•9•12•4•1•Updated May 8, 2025May 8, 2025
AR_HINTS
Public
The repository accompanying the HINTS paper in Frontiers in Neurology. An OST-HMD (HL2) was used to perform head-eye tracking measurements during the applicatio…
ShaderLab
•
Other
•0•2•0•0•Updated Mar 21, 2025Mar 21, 2025
PUMA
Public
Python
•0•1•1•0•Updated Mar 18, 2025Mar 18, 2025
Transfer-learning-across-domain-boundaries
Public
Jupyter Notebook
•
Other
•0•2•0•0•Updated Feb 4, 2025Feb 4, 2025
CLUE
Public
CLUE: A Clinical Language Understanding Evaluation for LLMs
Python
•
MIT License
•5•24•0•0•Updated Jan 22, 2025Jan 22, 2025
TwixMRIAnonymizer
Public
Lightweight anonymization tool for Siemens twix MRI dataformat (.dat)
mri siemens raw-data
mri siemens raw-data anonymization twix
Python
•
MIT License
•0•5•0•0•Updated Jan 21, 2025Jan 21, 2025
k-Strip
Public
k-strip: A novel segmentation algorithm in k-space for the application of skull stripping
python ai ml
python ai ml mri k-space skull-stripping cvnn
Python
•
Other
•1•7•0•0•Updated Nov 11, 2024Nov 11, 2024
ML_in_Medicine_Interactive_Seminar
Public
Course materials of WS 2022/2023 Uni-DuE Seminar "ML in Medicine - Theory & Practice"
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Sep 11, 2024Sep 11, 2024
Tumor-likelihood-estimation-on-MRI-prostate-data-by-utilizing-k-Space-information
Public
Preprocessing and prediction pipeline for the classification of magnetic resonance imaging (MRI) that takes advantage of the information rich complex valued k-S…
machine-learning mri k-space
machine-learning mri k-space
Python
•0•5•0•0•Updated Jul 17, 2024Jul 17, 2024
MLiM22-website
Public
TeX
•0•0•1•0•Updated May 23, 2024May 23, 2024
MOMO_Submission_Code
Public
Submission Code for "Deep Learning-driven classification of external DICOM studies for PACS archivation"
Jupyter Notebook
•
MIT License
•2•2•1•0•Updated Feb 7, 2024Feb 7, 2024
LeanStudyHost
Public
LeanStudyHost: A minimalist software solution to manage medical image based studies
JavaScript
•0•2•0•0•Updated Jan 24, 2024Jan 24, 2024
valuing-vicinity
Public
Valuing Vicinity: Memory attention framework for context-based semantic segmentation in histopathology
Python
•0•10•0•0•Updated Jun 12, 2023Jun 12, 2023
coder-aws
Public
A teaching platform based on Coder, hosted on AWS
Shell
•
MIT License
•0•0•0•0•Updated Mar 29, 2023Mar 29, 2023

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TIO-IKIM

All

29 repositories

shape-mi-demographics

shape-demographics-capi

STM

PhaseGen

kspace-breast-seg

AIANO

Learning-to-Look-Closer

medical_image_deidentification

kViT

AMD_SemSeg

Spacewalker

CellViT-Inference

CellViT-plus-plus

CellViT

controlled-clinical-generation

PathoPatcher

AR_HINTS

PUMA

Transfer-learning-across-domain-boundaries

CLUE

TwixMRIAnonymizer

k-Strip

ML_in_Medicine_Interactive_Seminar

Tumor-likelihood-estimation-on-MRI-prostate-data-by-utilizing-k-Space-information

MLiM22-website

MOMO_Submission_Code

LeanStudyHost

valuing-vicinity

coder-aws

Repositories list

29 repositories