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@SACGF ACRF Cancer Genomics Facility

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    22 repositories

    • variantgrid

      Public
      VariantGrid public repo
      Python
      •
      Other
      •3•27•480•10•Updated Sep 6, 2026Sep 6, 2026

    • BlindBeacon

      Public
      Blinded Agent access to GA4GH Beacon genomic databases
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 4, 2026Sep 4, 2026

    • cdot

      Public
      Transcript versions for HGVS libraries
      Python
      •
      MIT License
      •7•39•11•0•Updated Aug 30, 2026Aug 30, 2026

    • third-party-docker-images

      Public
      A collection of Dockerfiles for tools with no current public containers or which are not available through e.g. PyPI, BioConda
      Shell
      •0•0•0•0•Updated Aug 27, 2026Aug 27, 2026

    • Jasmine

      Public
      Jasmine: SV Merging Across Samples
      Java
      •
      MIT License
      •24•0•0•0•Updated Aug 11, 2026Aug 11, 2026

    • variantgrid_api

      Public
      Python
      •
      MIT License
      •1•0•2•0•Updated Aug 7, 2026Aug 7, 2026

    • allomix

      Public
      Python
      •
      MIT License
      •0•3•8•0•Updated Jul 28, 2026Jul 28, 2026

    • cdot_rest

      Public
      cdot REST server
      Python
      •
      MIT License
      •1•4•2•0•Updated Jul 22, 2026Jul 22, 2026

    • StrVCTVRE

      Public
      StrVCTVRE, a structural variant classifier for exonic deletions and duplications
      Jupyter Notebook
      •
      MIT License
      •9•0•0•0•Updated Jun 22, 2026Jun 22, 2026

    • vibepaper

      Public
      Scientific paper template generator
      Python
      •
      MIT License
      •0•1•2•0•Updated Jun 14, 2026Jun 14, 2026

    • pededit

      Public
      Javascript pedigree editor
      TypeScript
      •
      GNU Affero General Public License v3.0
      •0•1•9•0•Updated Jun 11, 2026Jun 11, 2026

    • 2026_prac_4_github_advanced

      Public
      Practical for May 25 2026
      Shell
      •
      MIT License
      •22•0•0•0•Updated May 26, 2026May 26, 2026

    • variantgrid_admin_docs

      Public
      Documentation for managing a Variantgrid server
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • variantgrid_docs

      Public
      VariantGrid documentation
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 4, 2025Jul 4, 2025

    • hgvs

      Public
      HGVS variant name parsing and generation
      Python
      •
      MIT License
      •80•1•0•2•Updated May 7, 2025May 7, 2025

    • transect_web

      Public
      HTML
      •0•1•0•0•Updated Apr 23, 2025Apr 23, 2025

    • shariant_docs

      Public
      readthedocs for Shariant
      Shell
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • pyreference

      Public
      Python library for GFF / GTF reference files
      Python
      •
      MIT License
      •1•6•6•0•Updated Jul 10, 2023Jul 10, 2023

    • practical_week_9_github_repositories

      Public
      Shell
      •
      MIT License
      •9•0•0•0•Updated Oct 7, 2022Oct 7, 2022

    • uta_rest

      Public
      Python
      •
      MIT License
      •0•0•1•0•Updated Aug 12, 2022Aug 12, 2022

    • django-autocomplete-light

      Public
      A fresh approach to autocomplete implementations, specially for Django. Status: v3 stable, 2.x.x stable, 1.x.x deprecated. Please DO regularely ping us with you…
      Python
      •
      MIT License
      •460•0•0•0•Updated Feb 1, 2019Feb 1, 2019

    • bwa_gatk_freebayes-pipeline

      Public
      Pipeline for fastq | bam files which are aligned with BWA, deduplicated with GATK and variants called with GATK or freebayes
      Python
      •0•0•0•0•Updated Nov 30, 2018Nov 30, 2018
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