Repositories list

• HOSS

  Public
  Hierarchical Optimization of Systems Simulations: A suite of tools working with the FindSim project for model optimization

  Python

  •1•1•1•0•Updated Nov 29, 2025Nov 29, 2025

• FindSim

  Public
  FindSim - A Framework for Integrating Neuronal Data and Signaling Models

  moosesignallingmodel-estimation+ 1biochemical-networks

  GAP

  •8•7•8•2•Updated Nov 22, 2025Nov 22, 2025

• HillTau

  Public
  Sparse, efficient, non-ODE approximation for biochemical signaling

  Python

  •

  GNU General Public License v3.0

  •3•1•1•1•Updated Aug 30, 2025Aug 30, 2025

• Cell_Synapse_Variability

  Public
  Code and data for paper on cell/synapse heterogeneity and variability, Sulu Mohan and U.S. Bhalla

  GAP

  •0•0•0•0•Updated Jun 8, 2025Jun 8, 2025

• DBLO_paper

  Public
  AGS Script

  •1•0•0•0•Updated May 7, 2025May 7, 2025

• STP_EI_paper_figs

  Public
  Python

  •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

• moose-core

  Public
  C++ basecode and python scripting interface

  pythonneuronspython-interface+ 4neural-simulatormoosemoose-simulatorconductance-based-neuron

  C++

  •

  GNU General Public License v3.0

  •35•19•47•3•Updated Mar 20, 2025Mar 20, 2025

• synaptic-convergence-paper

  Public
  Convergence of grouped and sequential inputs from neural ensembles in a randomly connected feedforward network

  C

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• moose-examples

  Public
  Example scripts, demo and tutorials

  demoexamplesneuroscience+ 1moose

  Python

  •

  GNU General Public License v2.0

  •17•6•2•5•Updated Nov 28, 2024Nov 28, 2024

• behaveArd

  Public
  Arduino and Python interface code for mouse behaviour.

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 10, 2024Nov 10, 2024

• hossFigs

  Public
  Figures for paper on Hierarchical optimization

  GAP

  •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

• Asymmetries-Analysis-Scripts

  Public
  Short scripts to analyse and plot grid stimulation data for asymmetries project

  Jupyter Notebook

  •1•0•1•0•Updated Oct 28, 2024Oct 28, 2024

• almirah

  Public
  a dataset management tool

  pythondatasetdataset-management

  Python

  •

  MIT License

  •2•1•1•1•Updated Jun 26, 2024Jun 26, 2024

• MouseBehaviour

  Public
  Arduino and PointGrey camera based behaviour setup.

  arduinopython3animal-behavior+ 1pointgrey

  C++

  •

  GNU General Public License v3.0

  •5•2•7•3•Updated Oct 3, 2023Oct 3, 2023

• TimeCellAnalysis

  Public
  MATLAB

  •3•0•0•1•Updated Jan 28, 2023Jan 28, 2023

• TimeCellAnalysis-1

  Public
  MATLAB

  •3•0•0•0•Updated Jan 28, 2023Jan 28, 2023

• CAMP2022-moose-gui

  Public
  Python

  •1•0•0•0•Updated Aug 4, 2022Aug 4, 2022

• CNS-2022-satellite-tutorial-MOOSE

  Public
  Moose tutorial for CNS 2022

  Python

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Jun 22, 2022Jun 22, 2022

• deploy

  Public
  Deploy BhallaLab applications to PyPI and docker.

  Shell

  •

  GNU General Public License v3.0

  •2•0•0•2•Updated Jun 20, 2022Jun 20, 2022

• rho-matlab

  Public
  MATLAB

  •

  MIT License

  •2•0•0•0•Updated Jan 31, 2022Jan 31, 2022

• moose

  Public
  MOOSE simulator.

  neuroscienceneural-simulatormoose+ 1moose-simulator

  C++

  •

  GNU General Public License v3.0

  •20•27•10•3•Updated Jan 28, 2022Jan 28, 2022

• 2p_analysis

  Public
  Analysis scripts for 2-P Ca imaging datasets along with behaviour.

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 2, 2021Nov 2, 2021

• dynamic_clamp

  Public
  A fast, microcontroller-based dynamic clamp system

  C++

  •

  Other

  •6•0•0•0•Updated Jul 18, 2021Jul 18, 2021

• homebrew-moose

  Public
  Homebrew formulae for MOOSE and related projects

  Ruby

  •

  GNU General Public License v3.0

  •2•0•1•1•Updated Mar 13, 2020Mar 13, 2020

• FindSimLayout

  Public
  layout display for Model

  JavaScript

  •

  GNU General Public License v3.0

  •1•0•1•0•Updated Sep 13, 2019Sep 13, 2019

• GSoC

  Public
  Google Summer of Code (GSOC) Projects

  gsocgsoc-2016gsoc-2017+ 1gsoc-2018

  HTML

  •

  MIT License

  •2•0•0•0•Updated Aug 22, 2019Aug 22, 2019

• Scripts

  Public
  Some scripts for varisous lab projects

  bhallalab

  GAP

  •5•4•0•0•Updated Aug 6, 2019Aug 6, 2019

• moose-gui

  Public
  PyQt frontend (chemical signaling and neuronal simulations) for MOOSE

  Python

  •5•1•16•5•Updated Jun 28, 2019Jun 28, 2019

• moogli

  Public
  Extension of https://github.com/aviralg/moogli

  C++

  •

  GNU General Public License v2.0

  •0•0•0•1•Updated Jun 4, 2019Jun 4, 2019

• moose-binder

  Public
  Some MOOSE examples on binder.

  neurosciencencbsmoose+ 3binder-readybinder-jupyter-notebookbhallalab

  Jupyter Notebook

  •1•0•0•0•Updated Jun 3, 2019Jun 3, 2019