I have prepared some Jupyter notebooks to help MD practitioners new to OpenMM get started:
https://github.com/choderalab/openmm-tutorials
It would be great to include these in the OpenMM Tutorials page.
One approach is to use jupyter nbconvert to convert them to Markdown, but this loses a lot of formatting of the output cells and graphical displays.
An alternative might be to add jekyll-jupyter-notebook support to the Jekyll static site renderer and just include the notebooks directly.