tower.yml

reports:
  multiqc_report.html:
    display: "MultiQC HTML report"
  "**/arriba/*.arriba.fusions.tsv":
    display: "Arriba identified fusion TSV report"
  "**/arriba_visualisation/*_combined_fusions_arriba_visualisation.pdf":
    display: "PDF visualisation of the transcripts involved in predicted fusions"
  "**/fastp/*fastp.html":
    display: "Post fastp trimming HTML report"
  "**/fastqc/*_fastqc.html":
    display: "FastQC HTML report"
  "**/fastqc_for_fastp/*_fastqc.html":
    display: "FastQC HTML report for trimmed reads"
  "**/fusioncatcher/*.fusioncatcher.fusion-genes.txt":
    display: "FusionCatcher identified fusion TXT report"
  "**/fusioninspector/*.fusion_inspector_web.html":
    display: "FusionInspector web HTML report"
  "**/fusioninspector/*.FusionInspector.fusions.abridged.tsv":
    display: "FusionInspector TSV report"
  "**/fusionreport/*/*_fusionreport_index.html":
    display: "Fusion-report HTML report"
  "**/fusionreport/*/*.html":
    display: "Individual fusion report HTML files"
  "**/pipeline_info/execution_report_*.html":
    display: "Pipeline execution report HTML"
  "**/pipeline_info/pipeline_dag_*.html":
    display: "Pipeline DAG HTML"
  "**/vcf/*_fusion_data.vcf":
    display: "Collected statistics on each fusion fed to FusionInspector in VCF format"
  "**/picard/*.MarkDuplicates.metrics.txt":
    display: "Picard: Metrics from CollectRnaMetrics"
  "**/picard/*_rna_metrics.txt":
    display: "GATK4: Metrics from MarkDuplicates"
  "**/picard/*insert*size*metrics.txt":
    display: "GATK4: Metrics from InsertSizeMetrics"
  "**/picard/*pdf":
    display: "GATK4: InsertSizeMetrics histogram"
  "**/star_for_starfusion/*ReadsPerGene.out.tab":
    display: "Number of reads per gene"
  "**/starfusion/*.starfusion.fusion_predictions.tsv":
    display: "STAR-Fusion identified fusion TSV report"
  "**/stringtie/*/*stringtie.merged.gtf":
    display: "Merged GTFs from StringTie with annotations"