Pending tasks for v1.0.0

[vinisalazar]

Blocking

• Port local modules to nf-core/modules
  • mifaser — WIP in Add mifaser modules#11643
  • humann/humann — WIP in Add humann3 modules#11201
  • fmhfunprofiler — bioconda submission needed first
• Valid test_full config
• Remove TODO comments from module files
• Fix code formatting (nextflow lint --format)
• Fix parameter default inconsistencies (nf-core pipeline schema build)

Docs (non-blocking)

• docs/output.md — FastQC outputs, per-tool descriptions, website admonitions
• docs/usage.md — website admonitions, database version notes
• Separate test configs for tools disabled in conf/test.config

[vinisalazar]

@miraep8 just remembered you were leading the action to add fmhfunprofiler to Bioconda (and then we can add to nf-core/modules, etc), could you provide an update here when you have one?

thx