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feat: promote all ready features from experiments to master

Syncs src/, tests/, crates/, Cargo.toml, and docs from experiments. All 1986 workspace tests pass; clippy clean. Features included: - codescout-embed crate extraction (Embedder, chunker, local/remote) - Metadata-enriched chunks (metadata column, header prefix, migration) - Asymmetric query prefix for CodeRankEmbed models - Three-level Guidance taxonomy (hint/warning/must_follow) - Prompt efficiency overhaul (D1–D5, ONBOARDING_VERSION=7) - MCP resources: doc://, memory://, project://summary, tool-guide - Progress notifications (2 Hz throttle, ProgressSink) - read_markdown: adaptive tiers + @file_* refs + MustFollow overflow - list_symbols: three-mode progressive directory dispatch - Bash/shell support (tree-sitter-bash, AST chunker, LSP config) - Cross-process write serialization (fd-lock RAII WriteGuard) - Index scope guard + preflight elicitation - Global config (XDG path, two-layer global+project merge) - LSP multiplexer: per-language opt-out, rust enabled (idle 180s) - Per-file diversity cap on semantic_search results - agent.rs → agent/ module refactor (WriteGuard) - BUG-035/036/037/039/041/042/043/044 fixes - Cancel-aware tool dispatch + child process reaping Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

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98 files changed

.gitignore
Cargo.lock
Cargo.toml
crates
- codescout-embed
  - Cargo.toml
  - src
- librarian-mcp
  - CREDITS.md
  - Cargo.toml
  - src
    - catalog
    - classify.rs
    - embedding.rs
    - filter.rs
    - frontmatter.rs
    - ids.rs
    - indexer.rs
    - lib.rs
    - main.rs
    - preview
    - prompts
      - server_instructions.md
    - server.rs
    - tools
    - util.rs
    - workspace.rs
  - tests
    - fixtures/repo_a
      - README.md
      - docs
        research
        2026-04-10-bar.md
        superpowers/specs
        2026-04-19-foo.md
    - mcp_integration.rs
src
- agent
  - mod.rs
  - write_guard.rs
- ast
  - mod.rs
  - parser.rs
- config
- dashboard
  - mod.rs
  - routes.rs
- embed
- logging.rs
- lsp
  - client.rs
  - manager.rs
  - mux
    - process.rs
    - test_support.rs
  - ops.rs
  - servers
    - mod.rs
- mcp_resources
- memory
  - anchors.rs
  - mod.rs
- prompts
- server.rs
- tools
- usage
  - db.rs
- util
  - path_security.rs
tests

`‎.gitignore‎`

-Original file line number
+Diff line change
 /.claude/
 /.fastembed_cache/
 /.codescout/tmp/
 +/.buddy/
 +# Cross-process write lock file (per-project; recreated on activate)
 +.codescout/write.lock

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