Right now using an fna.gz file will try to rename it as is (making a gzip but ending in .fa). The subsequent run with convertRefName processing will fail with: awk: cmd. line:1: (FILENAME=GCA_047372625.1_UCONN_HLeu1_genomic.fna.gz FNR=421) warning: Invalid multibyte data detected. There may be a mismatch between your data and your locale.
Using an unzipped reference file works around this but it would be nice not to have this requirement and also to fail explicitly if the conversion/renaming fails as now it looks successful.
Right now using an fna.gz file will try to rename it as is (making a gzip but ending in .fa). The subsequent run with convertRefName processing will fail with:
awk: cmd. line:1: (FILENAME=GCA_047372625.1_UCONN_HLeu1_genomic.fna.gz FNR=421) warning: Invalid multibyte data detected. There may be a mismatch between your data and your locale.Using an unzipped reference file works around this but it would be nice not to have this requirement and also to fail explicitly if the conversion/renaming fails as now it looks successful.