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Manish Kumar
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Update unit tests
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‎.github/workflows/ci.yml‎

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# .github/workflows/ci.yml
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#
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# CI/CD pipeline for omni_tool_runtime
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#
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# Jobs
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# ────
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# lint – ruff check + format
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# typecheck – mypy
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# test – pytest + coverage (matrix: 3.11, 3.12, 3.13)
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# publish – build sdist/wheel, push to PyPI (on version tag push)
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# docker – build & push Docker image (on version tag push)
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name: CI/CD
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on:
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push:
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branches: ["main", "master"]
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tags: ["v*.*.*"]
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pull_request:
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branches: ["main", "master"]
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# Cancel in-flight runs for the same ref so PRs don't queue up
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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env:
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# Keeps pip quiet and ensures outputs are unbuffered
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PIP_DISABLE_PIP_VERSION_CHECK: "1"
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PYTHONUNBUFFERED: "1"
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# ──────────────────────────────────────────────────────────────────────────────
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# 1. LINT (ruff)
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# ──────────────────────────────────────────────────────────────────────────────
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jobs:
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lint:
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name: Lint (ruff)
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Cache pip
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uses: actions/cache@v4
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with:
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path: ~/.cache/pip
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key: lint-pip-${{ hashFiles('**/pyproject.toml', '**/requirements*.txt') }}
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- name: Install ruff
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run: pip install ruff
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- name: ruff check (lint)
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run: ruff check .
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- name: ruff format (check only)
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run: ruff format --check .
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# ──────────────────────────────────────────────────────────────────────────────
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# 2. TYPE-CHECK (mypy)
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# ──────────────────────────────────────────────────────────────────────────────
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typecheck:
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name: Type-check (mypy)
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Cache pip
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uses: actions/cache@v4
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with:
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path: ~/.cache/pip
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key: mypy-pip-${{ hashFiles('**/pyproject.toml', '**/requirements*.txt') }}
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- name: Install package + mypy
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# Install with all extras so mypy can see optional deps (azure, aws)
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run: |
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pip install -e ".[azure,aws]"
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pip install mypy boto3-stubs[s3] azure-storage-blob azure-identity
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- name: mypy
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run: mypy omni_tool_runtime --ignore-missing-imports
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# ──────────────────────────────────────────────────────────────────────────────
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# 3. TEST (pytest + coverage matrix)
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# ──────────────────────────────────────────────────────────────────────────────
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test:
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name: Test (Python ${{ matrix.python-version }})
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runs-on: ubuntu-latest
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needs: [lint, typecheck]
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.11", "3.12", "3.13"]
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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- name: Cache pip
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uses: actions/cache@v4
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with:
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path: ~/.cache/pip
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key: test-pip-${{ matrix.python-version }}-${{ hashFiles('**/pyproject.toml', '**/requirements*.txt') }}
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- name: Install package + test deps
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run: pip install -e ".[dev]"
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- name: Run tests with coverage
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run: |
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pytest \
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--cov=omni_tool_runtime \
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--cov-report=term-missing \
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--cov-report=xml:coverage.xml \
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--cov-fail-under=85 \
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-v
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- name: Upload coverage report
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# Only upload once (Python 3.12) to avoid duplicate reports
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if: matrix.python-version == '3.12'
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uses: actions/upload-artifact@v4
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with:
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name: coverage-report
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path: coverage.xml
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retention-days: 7
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# ──────────────────────────────────────────────────────────────────────────────
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# 4. PUBLISH TO PyPI (only on version tags, e.g. v1.2.3)
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# ──────────────────────────────────────────────────────────────────────────────
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publish:
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name: Publish to PyPI
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runs-on: ubuntu-latest
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needs: [test]
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if: startsWith(github.ref, 'refs/tags/v')
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# Trusted publishing — no API token stored in secrets
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permissions:
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id-token: write # required for OIDC PyPI trusted publishing
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contents: read
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environment:
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name: pypi
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url: https://pypi.org/p/omnibioai-tool-runtime
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Install build tools
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run: pip install build
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- name: Build sdist + wheel
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run: python -m build
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- name: Verify dist contents
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run: ls -lh dist/
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- name: Publish to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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# Uses OIDC trusted publishing — configure the PyPI project to trust
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# this repo's GitHub Actions environment ("pypi") before first release.
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# No PYPI_API_TOKEN secret needed.
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# ──────────────────────────────────────────────────────────────────────────────
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# 5. DOCKER (only on version tags)
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# ──────────────────────────────────────────────────────────────────────────────
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docker:
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name: Build & Push Docker image
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runs-on: ubuntu-latest
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needs: [test]
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if: startsWith(github.ref, 'refs/tags/v')
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permissions:
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contents: read
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packages: write # required to push to GHCR
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steps:
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- uses: actions/checkout@v4
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- name: Extract version from tag
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id: meta
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uses: docker/metadata-action@v5
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with:
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images: |
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ghcr.io/${{ github.repository }}
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tags: |
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# tag the image with the git tag (v1.2.3 → 1.2.3)
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type=semver,pattern={{version}}
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# also push a "latest" tag
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type=raw,value=latest
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- name: Set up Docker Buildx
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uses: docker/setup-buildx-action@v3
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- name: Log in to GitHub Container Registry
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uses: docker/login-action@v3
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with:
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registry: ghcr.io
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username: ${{ github.actor }}
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password: ${{ secrets.GITHUB_TOKEN }}
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- name: Build and push
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uses: docker/build-push-action@v5
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with:
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context: .
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push: true
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tags: ${{ steps.meta.outputs.tags }}
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labels: ${{ steps.meta.outputs.labels }}
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# Layer cache speeds up rebuilds
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cache-from: type=gha
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cache-to: type=gha,mode=max

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