Skip to content

How do I separate K562 and GM12878 in KG-0210-PL1 scRNA-seq file #2

@gmurtaza404

Description

@gmurtaza404

Hello, I am trying to reproduce some of the results from the paper. I am currently trying to separate all cell line datasets. I have been able to follow the instructions in the supplementary section to segregate K562-NIH3T3 mixture and process the MDS-L datasets. Currently I am unable to segregate GM12878 cells from the K562/GM12878 mixture. The details in the supplementary section suggests that they were segregated based on their "first round barcodes", how do I access these first round barcodes, and how do I get the mapping of these barcodes to cell lines?

Thanks!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions