final merge conflict

anna-parker · anna-parker · commit f69d2ace81a7 · 2025-08-11T09:01:57.000+02:00
diff --git a/preprocessing/nextclade/src/loculus_preprocessing/prepro.py b/preprocessing/nextclade/src/loculus_preprocessing/prepro.py
@@ -424,8 +424,6 @@ def enrich_with_nextclade(  # noqa: C901, PLR0914, PLR0915
         aligned_nucleotide_sequences[id] = {}
         alerts.warnings[id] = []
         alerts.errors[id] = []
-        for gene in config.genes:
-            aligned_aminoacid_sequences[id][gene] = None
         (
             unaligned_nucleotide_sequences[id],
             aligned_nucleotide_sequences[id],

Original file line number	Diff line number	Diff line change
`@@ -424,8 +424,6 @@ def enrich_with_nextclade( # noqa: C901, PLR0914, PLR0915`
`424`	`424`	`aligned_nucleotide_sequences[id] = {}`
`425`	`425`	`alerts.warnings[id] = []`
`426`	`426`	`alerts.errors[id] = []`
`427`		`- for gene in config.genes:`
`428`		`- aligned_aminoacid_sequences[id][gene] = None`
`429`	`427`	`(`
`430`	`428`	`unaligned_nucleotide_sequences[id],`
`431`	`429`	`aligned_nucleotide_sequences[id],`