diff --git a/.github/workflows/spatm_install.yml b/.github/workflows/spatm_install.yml index 78331d0..e130d27 100644 --- a/.github/workflows/spatm_install.yml +++ b/.github/workflows/spatm_install.yml @@ -1,4 +1,4 @@ -name: SpaTM Install +name: Install on: push: diff --git a/.github/workflows/spatm_test.yml b/.github/workflows/spatm_test.yml index 5f16cdd..5991e8d 100644 --- a/.github/workflows/spatm_test.yml +++ b/.github/workflows/spatm_test.yml @@ -1,4 +1,4 @@ -name: SpaTM Tests +name: Tests on: push: diff --git a/README.md b/README.md index e9a34ad..b5d8232 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,8 @@ # A Spatial Topic Model (SpaTM) for Inferring Spatially Informed Transcriptional Programs +[![Manuscript](https://img.shields.io/badge/DOI-10.1093%2Fbib%2Fbbaf657-blue)](https://doi.org/10.1093/bib/bbaf657) +[![Install](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_install.yml/badge.svg)](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_install.yml) +[![Tests](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_test.yml/badge.svg)](https://github.com/li-lab-mcgill/SpaTM/actions/workflows/spatm_test.yml) + This repository contains the R package for the Spatial Topic Model we have developed for flexible and interpretable analysis of spatial transcriptomics data. The method integrates multiple topic modelling frameworks to enable: