Error message when creating a phyloseq object

[hammerklaviersonate]

Hello,

I am trying to create a phyloseq object with the output data from qiime2 to (otu table, sample metadata, rooted tree and taxonomy file)

However, when I call this command:

ps <- phyloseq(otu_table(otu_transformed, taxa_are_rows = TRUE), taxonomy, metadata, phy_tree(tree))

I receive the following error:

"unable to find an inherited method for function ‘prune_samples’ for signature ‘samples = "array", x = "phyloseq"’

I am really helpless as to what the problem might be here... I am using R 4.5.1

Thanks in advance for any help!