Merge pull request #107 from inbo/0.4.0

0.4.0

Author: sannegovaert

CITATION.cff

@@ -8,19 +8,26 @@ message: 'To cite package "movepub" in publications use:'
 type: software
 license: MIT
 title: 'movepub: Prepare Movebank Data for Publication'
-version: 0.3.0
-abstract: Prepare animal tracking data from 'Movebank' (<https://movebank.org>) for
-  publication in a research repository or the Global Biodiversity Information Facility
-  ('GBIF' <https://www.gbif.org>).
+version: 0.4.0
+abstract: Prepare animal tracking data from 'Movebank' (<https://www.movebank.org/>)
+  for publication in a research repository. With 'movepub' you can document data with
+  metadata following the Data Package standard and transform these to Darwin Core
+  and Ecological Metadata Language ('EML') for publication to the Global Biodiversity
+  Information Facility ('GBIF') and the Ocean Biodiversity Information System ('OBIS').
 authors:
 - family-names: Desmet
   given-names: Peter
   email: peter.desmet@inbo.be
   orcid: https://orcid.org/0000-0002-8442-8025
   affiliation: Research Institute for Nature and Forest (INBO)
+- family-names: Govaert
+  given-names: Sanne
+  email: sanne.govaert@inbo.be
+  orcid: https://orcid.org/0000-0002-8939-1305
+  affiliation: Research Institute for Nature and Forest (INBO)
 repository-code: https://github.com/inbo/movepub
-url: https://github.com/inbo/movepub
-date-released: '2024-04-24'
+url: https://inbo.github.io/movepub/
+date-released: '2025-08-27'
 contact:
 - family-names: Desmet
   given-names: Peter
@@ -42,8 +49,8 @@ references:
   institution:
     name: R Foundation for Statistical Computing
     address: Vienna, Austria
-  year: '2024'
-  version: '>= 2.10'
+  year: '2025'
+  version: '>= 4.1.0'
 - type: software
   title: cli
   abstract: 'cli: Helpers for Developing Command Line Interfaces'
@@ -53,8 +60,8 @@ references:
   authors:
   - family-names: Csárdi
     given-names: Gábor
-    email: csardi.gabor@gmail.com
-  year: '2024'
+    email: gabor@posit.co
+  year: '2025'
   doi: 10.32614/CRAN.package.cli
 - type: software
   title: dplyr
@@ -79,7 +86,7 @@ references:
     given-names: Davis
     email: davis@posit.co
     orcid: https://orcid.org/0000-0003-4777-038X
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.dplyr
 - type: software
   title: EML
@@ -95,7 +102,7 @@ references:
   - family-names: Jones
     given-names: Matthew B.
     orcid: https://orcid.org/0000-0003-0077-4738
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.EML
 - type: software
   title: frictionless
@@ -106,17 +113,25 @@ references:
   authors:
   - family-names: Desmet
     given-names: Peter
-    email: peter.desmet.work@gmail.com
+    email: peter.desmet@inbo.be
     orcid: https://orcid.org/0000-0002-8442-8025
+    affiliation: Research Institute for Nature and Forest (INBO)
   - family-names: Oldoni
     given-names: Damiano
     email: damiano.oldoni@inbo.be
     orcid: https://orcid.org/0000-0003-3445-7562
+    affiliation: Research Institute for Nature and Forest (INBO)
   - family-names: Huybrechts
     given-names: Pieter
     email: pieter.huybrechts@inbo.be
     orcid: https://orcid.org/0000-0002-6658-6062
-  year: '2024'
+    affiliation: Research Institute for Nature and Forest (INBO)
+  - family-names: Govaert
+    given-names: Sanne
+    email: sanne.govaert@inbo.be
+    orcid: https://orcid.org/0000-0002-8939-1305
+    affiliation: Research Institute for Nature and Forest (INBO)
+  year: '2025'
   doi: 10.32614/CRAN.package.frictionless
 - type: software
   title: jsonlite
@@ -127,10 +142,46 @@ references:
   authors:
   - family-names: Ooms
     given-names: Jeroen
-    email: jeroen@berkeley.edu
+    email: jeroenooms@gmail.com
     orcid: https://orcid.org/0000-0002-4035-0289
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.jsonlite
+- type: software
+  title: lifecycle
+  abstract: 'lifecycle: Manage the Life Cycle of your Package Functions'
+  notes: Imports
+  url: https://lifecycle.r-lib.org/
+  repository: https://CRAN.R-project.org/package=lifecycle
+  authors:
+  - family-names: Henry
+    given-names: Lionel
+    email: lionel@posit.co
+  - family-names: Wickham
+    given-names: Hadley
+    email: hadley@posit.co
+    orcid: https://orcid.org/0000-0003-4757-117X
+  year: '2025'
+  doi: 10.32614/CRAN.package.lifecycle
+- type: software
+  title: move2
+  abstract: 'move2: Processing and Analysing Animal Trajectories'
+  notes: Imports
+  url: https://bartk.gitlab.io/move2/
+  repository: https://CRAN.R-project.org/package=move2
+  authors:
+  - family-names: Kranstauber
+    given-names: Bart
+    email: b.kranstauber@uva.nl
+    orcid: https://orcid.org/0000-0001-8303-780X
+  - family-names: Safi
+    given-names: Kamran
+    orcid: https://orcid.org/0000-0002-8418-6759
+  - family-names: Scharf
+    given-names: Anne K.
+    orcid: https://orcid.org/0000-0002-3357-8533
+  year: '2025'
+  doi: 10.32614/CRAN.package.move2
+  version: '>= 0.4.0'
 - type: software
   title: purrr
   abstract: 'purrr: Functional Programming Tools'
@@ -140,12 +191,12 @@ references:
   authors:
   - family-names: Wickham
     given-names: Hadley
-    email: hadley@rstudio.com
+    email: hadley@posit.co
     orcid: https://orcid.org/0000-0003-4757-117X
   - family-names: Henry
     given-names: Lionel
-    email: lionel@rstudio.com
-  year: '2024'
+    email: lionel@posit.co
+  year: '2025'
   doi: 10.32614/CRAN.package.purrr
 - type: software
   title: readr
@@ -163,7 +214,7 @@ references:
     given-names: Jennifer
     email: jenny@posit.co
     orcid: https://orcid.org/0000-0002-6983-2759
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.readr
 - type: software
   title: rlang
@@ -178,7 +229,7 @@ references:
   - family-names: Wickham
     given-names: Hadley
     email: hadley@posit.co
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.rlang
 - type: software
   title: tidyr
@@ -195,7 +246,7 @@ references:
     email: davis@posit.co
   - family-names: Girlich
     given-names: Maximilian
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.tidyr
 - type: software
   title: uuid
@@ -211,7 +262,7 @@ references:
   - family-names: Ts'o
     given-names: Theodore
     email: tytso@thunk.org
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.uuid
 - type: software
   title: worrms
@@ -227,8 +278,24 @@ references:
   - family-names: Vanhoorne.
     given-names: Bart
     email: bart.vanhoorne@vliz.be
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.worrms
+- type: software
+  title: xml2
+  abstract: 'xml2: Parse XML'
+  notes: Imports
+  url: https://xml2.r-lib.org
+  repository: https://CRAN.R-project.org/package=xml2
+  authors:
+  - family-names: Wickham
+    given-names: Hadley
+  - family-names: Hester
+    given-names: Jim
+  - family-names: Ooms
+    given-names: Jeroen
+    email: jeroenooms@gmail.com
+  year: '2025'
+  doi: 10.32614/CRAN.package.xml2
 - type: software
   title: knitr
   abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
@@ -240,7 +307,7 @@ references:
     given-names: Yihui
     email: xie@yihui.name
     orcid: https://orcid.org/0000-0003-0645-5666
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.knitr
 - type: software
   title: rmarkdown
@@ -284,7 +351,7 @@ references:
     given-names: Richard
     email: rich@posit.co
     orcid: https://orcid.org/0000-0003-3925-190X
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.rmarkdown
 - type: software
   title: stringr
@@ -296,7 +363,7 @@ references:
   - family-names: Wickham
     given-names: Hadley
     email: hadley@posit.co
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.stringr
 - type: software
   title: testthat
@@ -308,23 +375,7 @@ references:
   - family-names: Wickham
     given-names: Hadley
     email: hadley@posit.co
-  year: '2024'
+  year: '2025'
   doi: 10.32614/CRAN.package.testthat
   version: '>= 3.0.0'
-- type: software
-  title: xml2
-  abstract: 'xml2: Parse XML'
-  notes: Suggests
-  url: https://xml2.r-lib.org/
-  repository: https://CRAN.R-project.org/package=xml2
-  authors:
-  - family-names: Wickham
-    given-names: Hadley
-    email: hadley@posit.co
-  - family-names: Hester
-    given-names: Jim
-  - family-names: Ooms
-    given-names: Jeroen
-  year: '2024'
-  doi: 10.32614/CRAN.package.xml2
 

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: movepub
 Title: Prepare Movebank Data for Publication
-Version: 0.3.0.9000
-Date: 2024-04-24
+Version: 0.4.0
+Date: 2025-08-27
 Authors@R: c(
     person("Peter", "Desmet", , "peter.desmet@inbo.be", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-8442-8025", affiliation = "Research Institute for Nature and Forest (INBO)")),
@@ -17,13 +17,13 @@ Authors@R: c(
            comment = "https://doi.org/10.3030/101112823")
   )
 Description: Prepare animal tracking data from 'Movebank'
-    (<https://movebank.org>) for publication in a research repository. With
+    (<https://www.movebank.org/>) for publication in a research repository. With
     'movepub' you can document data with metadata following the Data Package
     standard and transform these to Darwin Core and Ecological Metadata Language
     ('EML') for publication to the Global Biodiversity Information Facility
     ('GBIF') and the Ocean Biodiversity Information System ('OBIS').
 License: MIT + file LICENSE
-URL: https://github.com/inbo/movepub, https://inbo.github.io/movepub
+URL: https://github.com/inbo/movepub, https://inbo.github.io/movepub/
 BugReports: https://github.com/inbo/movepub/issues
 Depends: 
     R (>= 4.1.0)
@@ -49,8 +49,6 @@ Suggests:
     testthat (>= 3.0.0)
 VignetteBuilder: 
     knitr
-Remotes:
-    https://github.com/frictionlessdata/frictionless-r
 Config/testthat/edition: 3
 Encoding: UTF-8
 LazyData: true

NEWS.md

@@ -1,4 +1,4 @@
-# movepub (development version)
+# movepub 0.4.0
 
 ## write_eml
 

R/add_resource.R

@@ -5,7 +5,7 @@
 #' The function extends [frictionless::add_resource()].
 #' The title, definition, format and URI of each field are looked up in the
 #' latest version of the [Movebank Attribute Dictionary](
-#' http://vocab.nerc.ac.uk/collection/MVB/current) and included in the Table
+#' http://vocab.nerc.ac.uk/collection/MVB/current/) and included in the Table
 #' Schema of the resource.
 #'
 #' See `vignette("movepub")` for examples.

R/data.R

@@ -6,9 +6,9 @@
 #' [read_package()].
 #'
 #' This sample is derived from the Zenodo-deposited dataset
-#' [Dijkstra et al. (2022)](https://doi.org/10.5281/zenodo.10053903), but
-#' excludes the acceleration data.
-#' @source https://doi.org/10.5281/zenodo.10053903
+#' [Dijkstra et al. (2023)](https://zenodo.org/records/10053903), but excludes
+#' the acceleration data.
+#' @source \doi{10.5281/zenodo.10053903}
 #' @family sample data
 #' @examples
 #' \dontrun{

R/write_eml.R

@@ -33,7 +33,7 @@
 #'   Data have been standardized to Darwin Core using the [movepub](
 #'   https://inbo.github.io/movepub/) R package and are downsampled to the first
 #'   GPS position per hour. The original data are available in Dijkstra et al.
-#'   (2023, <https://doi.org/10.5281/zenodo.10053903>), a deposit of Movebank
+#'   (2023, \doi{10.5281/zenodo.10053903}), a deposit of Movebank
 #'   study [1605797471](
 #'   https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study1605797471).
 #' - **license**: License of the original dataset.

README.Rmd

@@ -16,14 +16,14 @@ knitr::opts_chunk$set(
 # movepub
 
 <!-- badges: start -->
-[![CRAN status](https://www.r-pkg.org/badges/version/movepub)](https://CRAN.R-project.org/package=movepub)
+![CRAN status](https://www.r-pkg.org/badges/version/movepub)
 [![R-CMD-check](https://github.com/inbo/movepub/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/inbo/movepub/actions/workflows/R-CMD-check.yaml)
 [![codecov](https://codecov.io/gh/inbo/movepub/branch/main/graph/badge.svg)](https://app.codecov.io/gh/inbo/movepub/)
 [![repo status](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15017582.svg)](https://doi.org/10.5281/zenodo.15017582)
 <!-- badges: end -->
 
-Movepub is an R package to prepare animal tracking data from [Movebank](https://movebank.org) for publication in a research repository. With movepub you can document data with metadata following the [Data Package](https://specs.frictionlessdata.io/) standard and transform these to [Darwin Core](https://dwc.tdwg.org) and Ecological Metadata Language ([EML](https://eml.ecoinformatics.org/)) for publication to the Global Biodiversity Information Facility ([GBIF](https://www.gbif.org)) and the Ocean Biodiversity Information System ([OBIS](https://obis.org)).
+Movepub is an R package to prepare animal tracking data from [Movebank](https://www.movebank.org/) for publication in a research repository. With movepub you can document data with metadata following the [Data Package](https://specs.frictionlessdata.io/) standard and transform these to [Darwin Core](https://dwc.tdwg.org) and Ecological Metadata Language ([EML](https://eml.ecoinformatics.org/)) for publication to the Global Biodiversity Information Facility ([GBIF](https://www.gbif.org)) and the Ocean Biodiversity Information System ([OBIS](https://obis.org)).
 
 To get started, see:
 

README.md

@@ -5,8 +5,7 @@
 
 <!-- badges: start -->
 
-[![CRAN
-status](https://www.r-pkg.org/badges/version/movepub)](https://CRAN.R-project.org/package=movepub)
+![CRAN status](https://www.r-pkg.org/badges/version/movepub)
 [![R-CMD-check](https://github.com/inbo/movepub/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/inbo/movepub/actions/workflows/R-CMD-check.yaml)
 [![codecov](https://codecov.io/gh/inbo/movepub/branch/main/graph/badge.svg)](https://app.codecov.io/gh/inbo/movepub/)
 [![repo
@@ -15,7 +14,7 @@ status](https://www.repostatus.org/badges/latest/active.svg)](https://www.repost
 <!-- badges: end -->
 
 Movepub is an R package to prepare animal tracking data from
-[Movebank](https://movebank.org) for publication in a research
+[Movebank](https://www.movebank.org/) for publication in a research
 repository. With movepub you can document data with metadata following
 the [Data Package](https://specs.frictionlessdata.io/) standard and
 transform these to [Darwin Core](https://dwc.tdwg.org) and Ecological