Phase 1 of phylogeny validation pipeline: fetch cytochrome c + taxonomy #81

	name: CI

	on:
	push:
	branches: [ main, master ]
	pull_request:
	branches: [ main, master ]

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11", "3.12"]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements.txt
	pip install -r requirements-dev.txt
	pip install -e .
	- name: Lint and Format check
	run: \|
	ruff check .
	ruff format --check .
	- name: Static type check with mypy
	run: \|
	mypy src/
	- name: Run tests (Global 68% floor)
	run: \|
	python -m pytest tests/ -v --cov=src --cov-fail-under=68
	- name: Verify Core and Losses coverage (80% minimum)
	run: \|
	python -m pytest tests/ -v --cov=src/core --cov=src/losses --cov-fail-under=80

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