Assess what is required and how to implement some nice features performed in https://github.com/gbouras13/hybracter such as the coupled polishing of polypolish+pypolca which seem to work nicely in a complementary manner. Maybe the plasmid assembly step. And maybe the chr reorientation step.
Check what and how can be done.
Assess what is required and how to implement some nice features performed in https://github.com/gbouras13/hybracter such as the coupled polishing of polypolish+pypolca which seem to work nicely in a complementary manner. Maybe the plasmid assembly step. And maybe the chr reorientation step.
Check what and how can be done.