How to build somalier?

[kpalin]

I've tried hard to build somalier but all attempts have failed.

My best attempt has been using a container apptainer shell --home /scratch/kpalin/tmp --bind /home/kpalin/software/somalier brentp/musl-hts-nim:latest running

/usr/local/bin/nsb -n somalier.nimble -s src/somalier.nim .

That fails with Error: Cannot satisfy the dependency on zip 0.3.1 and zip 0.2.1 .

Tinkering somalier.nimble I managed to get past that but then it requires cuda:

/home/kpalin/software/somalier/src/somalierpkg/findsites.nim(273, 9) Hint: 'x' is declared but not used [XDeclaredButNotUsed]
.......
/scratch/kpalin/tmp/.nimble/pkgs/nimblas-0.3.1/nimblas/private/common.nim(41, 12) Warning:     The flag -d:openblas is deprecated since NimBLAS 0.2
Use -d:blas=LIBNAME instead
   [User]
/scratch/kpalin/tmp/.nimble/pkgs/nimblas-0.3.1/nimblas/private/common.nim(52, 7) Hint: Using BLAS library matching pattern: libopenblas.so(|.3|.2|.1|.0) [User]
...................
/scratch/kpalin/tmp/.nimble/pkgs/nimcuda-0.2.2/nimcuda/cuda12_5/libpaths.nim(146, 10) Error: Could not find the cuda source headers! Please specify the location of the cuda includes directory by passing `-d:CudaIncludes="YOUR_PATH"` to the nim compiler.
error compiling code

Any hints how to do it? I'd like to edit the code, e.g. stripping out the html output and adjusting the tsv ones. Thanks in advance.

[brentp]

Hi, thanks for reporting. I just pushed a fix to the somalier.nimble so it can build again. Please try that and let me know any further problems.

[kpalin]

Thanks, now it appears working. I'll make a pull request with the build script when I have better time.