IndexDefect error in Version 0.2.1 - call for update in bioconda

[sunjh22]

Hi @brentp ,

Thanks for writing this useful tool.

I installed smoove 0.2.8 through bioconda, then used duphold in it (the version is 0.2.1) to calculate adjacent read depth of CNV regions. Unfortunately, an error throws out: "fatal.nim(49) sysFatal
Error: unhandled exception: index -1 not in 0 .. 159345972 [IndexDefect]".
Then I switched to use the latest version of duphold - v0.2.3 with exactly the same command line, and it worked. I do not know the reason for this error, but is it possible to update duphold or smoove in bioconda so we can use the latest duphold through it?

Many thanks in advance.

Best,
Jiahong

[brentp]

Hi, I think you could simply update the duphold bioconda recipe and make a pull-request and it would solve this issue.