|
| 1 | +## Submission |
| 2 | + |
| 3 | +This is a new submission of msaviz, version 1.3.0. The package reshapes |
| 4 | +multiple sequence alignments into tidy data frames and renders them as |
| 5 | +ggplot2 heatmaps or per-sequence lollipop charts. |
| 6 | + |
| 7 | +## R CMD check results |
| 8 | + |
| 9 | +0 errors | 0 warnings | 1 note |
| 10 | + |
| 11 | +The single note is the expected "New submission" message, as this is the |
| 12 | +first release of the package on CRAN. |
| 13 | + |
| 14 | +During local checking one further note may appear, "unable to verify current |
| 15 | +time", which is an artefact of the checking machine being unable to reach a |
| 16 | +time server and does not reflect anything in the package itself. It does not |
| 17 | +arise on a machine with a verifiable clock. |
| 18 | + |
| 19 | +## Test environments |
| 20 | + |
| 21 | +* local macOS (darwin), R 4.4.1 |
| 22 | +* win-builder, R-release and R-devel |
| 23 | +* GitHub Actions: ubuntu-latest, windows-latest and macos-latest, across R |
| 24 | + release, R-devel and R oldrel-1 |
| 25 | + |
| 26 | +## Notes for the reviewer |
| 27 | + |
| 28 | +One of the suggested packages, Biostrings, comes from Bioconductor rather than |
| 29 | +CRAN. It is used only optionally, as a convenience for reading alignment files |
| 30 | +and for accepting Biostrings alignment objects as input, and every reference to |
| 31 | +it in the tests, the vignette and the command-line scripts is guarded with |
| 32 | +requireNamespace() or skip_if_not_installed(), so the package builds, checks |
| 33 | +and runs fully without it. |
| 34 | + |
| 35 | +## Downstream dependencies |
| 36 | + |
| 37 | +There are no downstream dependencies, as this is a new package. |
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